View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1258_low_48 (Length: 281)

Name: NF1258_low_48

Description: NF1258

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1258_low_48

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 171; E-Value: 7e-92

Query Start/End: Original strand, 60 - 242

Target Start/End: Original strand, 28054794 - 28054976

Alignment:

Q	60	agtatggtagtaatattttatggagaaggaaagcaatgcaatttgctggttgagaggatcatggaatggaatatcgaagtgggtgggaaatcgtagataa	159	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28054794	agtatgttagtaatattttatggagaaggaaagcaatgcaatttgctagttgagaggatcatggaatggaatattgaagtgggtgggaaatcgtagataa	28054893	T

Q	160	aatatgaattaaattttggtttgttaatgtatgcatgtggtatagtgtgcacccattgttataataggacacgtcatattgtt	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28054894	aatatgaattaaattttggtttgttaatgtatgcatgtggtatagtgtgcacccattgttataataggacacgtcatattgtt	28054976	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 193 - 239

Target Start/End: Complemental strand, 40361500 - 40361454

Alignment:

Q	193	catgtggtatagtgtgcacccattgttataataggacacgtcatatt	239	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	40361500	catgtggtatgatgtgcacccattgttataacaggacacctcatatt	40361454	T

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