View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_49 (Length: 281)
Name: NF1258_low_49
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 4129738 - 4129919
Alignment:
| Q |
60 |
tcaagtcaatttcacacttggttgtggagataataatggtgaagggttgaatgtgaagccagaagagttatatgagtttactgttcttagagatgtggat |
159 |
Q |
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| T |
4129738 |
tcaactcaatttcacacttggttgtggagataataatggtgaagggttgaatgtgaagccagaagagttatatgagtttactgttcttagagatgtggat |
4129837 |
T |
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| Q |
160 |
tggcctttatcagattatgaaaagatgcaaccttattctcaacaggattgtcaacaatcttgtttgcatgattgcatctgtg |
241 |
Q |
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| T |
4129838 |
tggcctttatcagattatgaaaagatgcaaccttattctcaacaggattgtcaacaatcttgtttgcatgattgcatgtgtg |
4129919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 4106551 - 4106724
Alignment:
| Q |
60 |
tcaagtcaatttcacacttggttgtggagataataatggtgaagggttgaatgtgaagccagaagagttatatgagtttactgttcttagagatgtggat |
159 |
Q |
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|||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| | ||||| || |
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| T |
4106551 |
tcaactcaatttcacacttggttgtggagctgataatggtgaaggattgaatgtgaagccagaagatttgtatgagtttactgttcttacaaatgtgaat |
4106650 |
T |
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| Q |
160 |
tggcctttatcagattatgaaaagatgcaaccttattctcaacaggattgtcaacaatcttgtttgcatgattg |
233 |
Q |
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| T |
4106651 |
tggccattatcagattatgaacggatgcagccttattctcaacatgactgtcaacaatcttgtttgcatgattg |
4106724 |
T |
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