View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_50 (Length: 278)
Name: NF1258_low_50
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 36457884 - 36457623
Alignment:
| Q |
1 |
tacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtcattttcggtctgctacctattttcgatgacatccatttcca |
100 |
Q |
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| T |
36457884 |
tacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtcattttcggtctgctacctattttcgacgacattcatttcca |
36457785 |
T |
|
| Q |
101 |
actaagagattgaacacattaggaatactgtccataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaacagaccga |
200 |
Q |
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| T |
36457784 |
actaagagattgaacacattaggaatactgtccataaaaattatattatttctagcaatccatagagaccaaacaaccgctcaccacaacaacagaccga |
36457685 |
T |
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| Q |
201 |
gcgagccttttgtttttcactccccataaagacacattatgctgcagcagatgaaccacagg |
262 |
Q |
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| T |
36457684 |
gcgagccttttgtttttcactccccataaagacacattatgctgcagcagatgaaccacagg |
36457623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 11628377 - 11628456
Alignment:
| Q |
115 |
cacattaggaatactgtccataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaaca |
194 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| |
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| T |
11628377 |
cacattagaaatattgtccataaaaattatattatttctagcaatatatagagaccaaacaacctctcccaacaacaaca |
11628456 |
T |
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