View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_52 (Length: 262)
Name: NF1258_low_52
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3642003 - 3642240
Alignment:
| Q |
1 |
atgtaagttatgtccatttgcaattagattctcttacaacaacatattaacacatgatagtacaattctaaaaggcatgtaacagaaaatccatctgtat |
100 |
Q |
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| T |
3642003 |
atgtaagttatgtccatttgcaattagattctcttacaacaacatattaacacatgatggtacaattctaaaaggcatgtaacagaaaatccatctgtat |
3642102 |
T |
|
| Q |
101 |
gtcagtctgtgtatggtataagggtatatgctcttgaggcttgtaaacaaggactgcataattgttatacaagtcgtcaatgacaattcattcaagaata |
200 |
Q |
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| T |
3642103 |
gtcagtctgtgtatggtataagggtatatgctcttgaggcttgtaaacaaggactgcataattgttatacaagtcgtcaatgacaattcattcaagaata |
3642202 |
T |
|
| Q |
201 |
tcatcagtgccaaagttaacatgaccaggatattgatg |
238 |
Q |
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| T |
3642203 |
tcatcagtgccaaagttaacatgaccaggatattgatg |
3642240 |
T |
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