View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_57 (Length: 251)
Name: NF1258_low_57
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 14771648 - 14771841
Alignment:
| Q |
1 |
ctcaatcatcaatcacaacataattcttaattattttttcctctataatgagaatcggcagcaatccaatccaatttttcacgatactgctatggggatt |
100 |
Q |
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| T |
14771648 |
ctcaatcatcaatcacaacataattcttaattattttttcctctataatgagaatcggcagcaatccaatccaatttttcacgatactgctatgggggtt |
14771747 |
T |
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| Q |
101 |
tgtgctaaactctagaatagatggcgtnnnnnnnngcctttattgttaaaagagaatgtagcttagccaaaagcaggctgcatccattctttctg |
195 |
Q |
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| T |
14771748 |
tgtgctaaactctagaatagatggcgt-aaaaaaagcctttattgttaaaagagaatgtagcttagccaaaagcaggctgcatccattctttctg |
14771841 |
T |
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