View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_58 (Length: 251)
Name: NF1258_low_58
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_58 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 27697783 - 27698036
Alignment:
| Q |
9 |
caataatataagtttggtgacttgagtgaggagtgtagtaataaaaagtcaagaattcaagccctaat-----------actaacaaggttagcattgac |
97 |
Q |
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| T |
27697783 |
caataatataggtttggtgacttgagtgaggagtggagtaataaaaagtcaagaattcaagccctaatactaacataatactaacaaggttagcattgac |
27697882 |
T |
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| Q |
98 |
cattaaaataaaaacttgttcataaagacttttttaaaaataggataggatagtagtatgacccgccaattgggtgtaaagttttcgtaaactataattt |
197 |
Q |
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| T |
27697883 |
cattaaaataaaaacttgttcataaagactttttttaaaataggataggatagtagtatgacccaccaattgggtgtaaagttttcgtaaactataattt |
27697982 |
T |
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| Q |
198 |
atatttgatacctagaaatcaaaattataaccacacaattttctaattttaatt |
251 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27697983 |
atatttgatacctagaaatcaaaatttaaaccacacaattttctaattttaatt |
27698036 |
T |
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