View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_65 (Length: 237)
Name: NF1258_low_65
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 32339955 - 32339815
Alignment:
| Q |
20 |
agcataggcgaagaggcatgaacataa--ggtttaacaa-caattagggacaccatataacatgaagaaactgaaagcatggatttcacattggcatgaa |
116 |
Q |
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| T |
32339955 |
agcaaaggcgaagcggcatgaacataacaggtttaacaaacaattagggacaacatataacatgaagaaactgaaagcatggatttcacattggcataaa |
32339856 |
T |
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| Q |
117 |
cataacagatttcacactggtttaacaacataacaggtttc |
157 |
Q |
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| T |
32339855 |
cataacaggtttcacactggtttaacaacataacaggtttc |
32339815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 32339801 - 32339748
Alignment:
| Q |
143 |
aacataacaggtttcatattcggttaacaacagagcaggtttcacattgtcatg |
196 |
Q |
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| T |
32339801 |
aacataacaggtttcatattcggttaacaacatagcaggtttcacattgtcatg |
32339748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 32339814 - 32339758
Alignment:
| Q |
102 |
tcacattggcatgaacataacagatttcacactggtttaacaacataacaggtttca |
158 |
Q |
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| T |
32339814 |
tcacattggcatgaacataacaggtttcatattcggttaacaacatagcaggtttca |
32339758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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