View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_9 (Length: 494)
Name: NF1258_low_9
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 29 - 480
Target Start/End: Original strand, 23922257 - 23922708
Alignment:
| Q |
29 |
agtaaaatgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctaca |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23922257 |
agtaaaatgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcataca |
23922356 |
T |
|
| Q |
129 |
aggcgcgcctcaaggccattggcaaagtaatgagccaccctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23922357 |
aggcgcgcctcaaggccattggcaaagtaatgagccaccctttgagatgcttctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattag |
23922456 |
T |
|
| Q |
229 |
catttctattgtcattggcatacatagtttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaac |
328 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
23922457 |
catttctattgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttgggacgaac |
23922556 |
T |
|
| Q |
329 |
ctttccttcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatca |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922557 |
ctttccttcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatca |
23922656 |
T |
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| Q |
429 |
acaacactaatagccgattgcttgttactactcccttcttcttcttcgcgcc |
480 |
Q |
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| T |
23922657 |
acaacactaatagccgattgcttgttactactcccttcttcttcttcgcgcc |
23922708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 29 - 480
Target Start/End: Complemental strand, 23904727 - 23904276
Alignment:
| Q |
29 |
agtaaaatgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctaca |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| |||| |||||||||||||||| |
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| T |
23904727 |
agtaaaatgaacttgatatgctttcaaaaactcagcagcagtaattctcttagtgctcggcgaggaatagaatgtttgtgcaccagctctatcgcctaca |
23904628 |
T |
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| Q |
129 |
aggcgcgcctcaaggccattggcaaagtaatgagccaccctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattag |
228 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23904627 |
aggcgagcctcaaggccattggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattag |
23904528 |
T |
|
| Q |
229 |
catttctattgtcattggcatacatagtttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaac |
328 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
23904527 |
catttctattgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttcggacgaac |
23904428 |
T |
|
| Q |
329 |
ctttccttcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatca |
428 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904427 |
ctttccttcattagatgaaggtggttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatca |
23904328 |
T |
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| Q |
429 |
acaacactaatagccgattgcttgttactactcccttcttcttcttcgcgcc |
480 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904327 |
acaacactaatagccgattgcttgttactactcccttcttcttcttcgcgcc |
23904276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 35 - 297
Target Start/End: Original strand, 23912248 - 23912510
Alignment:
| Q |
35 |
atgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctacaaggcgc |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||| ||||||||||| || ||||||||||||||||| || | || | ||||| |||| ||| |
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| T |
23912248 |
atgaacttgatatgctttcaaaaactcagcagtagagatcctcttggtgctcggggaggaatagaatgtttgtgctctagtaccgtcgccgacaatgcgt |
23912347 |
T |
|
| Q |
135 |
gcctcaaggccattggcaaagtaatgagccaccctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattagcatttc |
234 |
Q |
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||||||||||||||||||||||||||||||| |||||| | | |||| ||| |||||||||||||||||||||||| ||| | || ||||||||||| | |
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| T |
23912348 |
gcctcaaggccattggcaaagtaatgagccaacctttgtggtccatccccagagggtgaagaatgttgcctaatctgcttcagtagctcattagcattcc |
23912447 |
T |
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| Q |
235 |
tattgtcattggcatacatagtttgtgaacacataagcagaagattccttaagtctatcgttt |
297 |
Q |
| |
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| |||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||| |
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| T |
23912448 |
tgttgtcattggcatacacagattgtgaacacataagcagaagattccttaaatctattgttt |
23912510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 23912628 - 23912726
Alignment:
| Q |
379 |
ccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttactactcc---cttcttcttctt |
474 |
Q |
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|||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| |||||||||||| |
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| T |
23912628 |
ccacattaagcaaaaccttatcaaacatctctgataattcatcctcatcaacagcactaatagctgattgcttgctacttctccaagcttcttcttctt |
23912726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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