View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259-Insertion-2 (Length: 387)
Name: NF1259-Insertion-2
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 50240277 - 50239901
Alignment:
| Q |
8 |
acgatgattgagatcattgccaacttgaagccagtttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattg |
107 |
Q |
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| T |
50240277 |
acgatgattgagatcattgccaacttgaagccagtttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattg |
50240178 |
T |
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| Q |
108 |
gaattagttaggtatataaaccataataataatgtgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaatta |
207 |
Q |
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| T |
50240177 |
gaattagttaggtatataaaccataataataatgtgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaatta |
50240078 |
T |
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| Q |
208 |
ttggaatgagtatagcaaaaagagtgaaaaatattggnnnnnnngtgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagataatttgaat |
307 |
Q |
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| T |
50240077 |
ttggaatgagtatagcaaaaagagtgaaaaatattggtttttttgtgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagat-atttgaat |
50239979 |
T |
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| Q |
308 |
ggatgaattagagaattgtgatgggttggattaaggaatgagattgtttatatatgttgggagtgacgaggtaggtgtgt |
387 |
Q |
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| T |
50239978 |
ggatgaatt--agaattgtgatgggttggattaaggaatgagattgtttatatatgttgggagtgacgaggtaggtgtgt |
50239901 |
T |
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