View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12590_high_1 (Length: 700)
Name: NF12590_high_1
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 17 - 690
Target Start/End: Original strand, 40753686 - 40754356
Alignment:
| Q |
17 |
tcatctatctcacaagtagtatttttaaaaaatttatcatttattgctttccacaacaaccaaaccgcggaatgccaaaccatcctcaatccgttaacca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40753686 |
tcatctatctcacaagtagtatttttaaaaaatttatcatttattgctttccacaacaaccaaaccgcggaatgccaaaccatcctcaatccgttaacca |
40753785 |
T |
|
| Q |
117 |
cctaattcttatttctagcctccccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaa |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40753786 |
cct---tcttatttctagcctccccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaa |
40753882 |
T |
|
| Q |
217 |
ccaaaccgacctcaccacttcacaatgtnnnnnnngatgactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40753883 |
ccaaaccgacctcaccacttcacaatgtaaaaaaagatgacttgaggattcctcatccctattgcacaaaacacacaaaatggaagcctccggtggaaga |
40753982 |
T |
|
| Q |
317 |
acgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40753983 |
acgttccttaacacaaggttatcttttgtagctatccggttacggagtgccttccaagcaaacgccaccactttagatggtgcggggctcttccacatgt |
40754082 |
T |
|
| Q |
417 |
cttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttc |
516 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40754083 |
cttcaaaaactcccttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttc |
40754182 |
T |
|
| Q |
517 |
ttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaa |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40754183 |
ttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccctacaaacaaa |
40754282 |
T |
|
| Q |
617 |
tttcttctccatgtgaacctccaatccacaccctcctccactagcaccccaacttccccgacttttgcctccct |
690 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40754283 |
tttcttctccatatgaacctccaatccactccctcctccactagcaccccaacttcccccacttttgcctccct |
40754356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 688
Target Start/End: Complemental strand, 13854444 - 13853775
Alignment:
| Q |
16 |
atcatctatctcacaagtagtatttttaaaaaatttatcatttattgctttccacaacaaccaaaccgcggaatgccaaaccatcctcaatccgttaacc |
115 |
Q |
| |
|
|||||||| ||| ||||||| ||| ||||||| | ||||||| ||||||||||||| ||||||||||||| |||||| || | || || ||||| | | |
|
|
| T |
13854444 |
atcatctacctcgcaagtagaattgttaaaaattatatcattccttgctttccacaataaccaaaccgcggtatgccacacaagccgcagcccgttgatc |
13854345 |
T |
|
| Q |
116 |
acctaattcttatttctagcctccccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctca |
215 |
Q |
| |
|
|||| |||| |||| | |||||||||||||||||||||||||||||| |||||||| || ||||||| || |||||||||||| |||||||||||| |
|
|
| T |
13854344 |
acct---tcttgtttcgactctccccacaccaacaatcccaatgaacaaataaattcggaggggttataaaggaacaattcatccacaccatcaatctca |
13854248 |
T |
|
| Q |
216 |
accaaaccgacctcaccacttcacaatgtnnnnnnngatgactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaag |
315 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||| || ||||| ||||||||||| ||||| ||||||||| | || || |||||||||| |
|
|
| T |
13854247 |
accaaaccgacctcaccacctcacaatgtagaaataggtgacacgttgattcttcatccctattacacaagacacacaaatttgaggcctccggtggaat |
13854148 |
T |
|
| Q |
316 |
aacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatg |
415 |
Q |
| |
|
||| ||||| | ||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| || || ||| |||||||||||| |
|
|
| T |
13854147 |
aacattcctaatcacgaggttatcttttgttgctatccggttacgaagtgccttccaagtaaacgccaccacttttgacggcacggggctcttccacata |
13854048 |
T |
|
| Q |
416 |
tcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccacttt |
515 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||| ||||||||| | ||| |||||||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
13854047 |
tcttcaaacactcccttttcctcttcaccccacccatcctcccttgaaaccacctcctccaacctcttatacgccgacttcaccgaaaaaactccactat |
13853948 |
T |
|
| Q |
516 |
cttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaa |
615 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||||||| |||||||| ||| ||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
13853947 |
cttccaacttccaccaccacacatcaagctcttgagtccacctcaactcttccaaatcctcattaagactaagcaacaattcgtcttcccacacaaacaa |
13853848 |
T |
|
| Q |
616 |
atttcttctccatgtgaacctccaatccacaccctcctccactagcaccccaacttccccgacttttgcctcc |
688 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
13853847 |
attccttctccatatgaacctccaatccactccctcctccactcgcaccccaacttcccccacctttgcctcc |
13853775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 8504763 - 8504854
Alignment:
| Q |
375 |
caaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacacc |
466 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||||||||||| |||||| || |||| || |||||||||| | ||| || ||||||||| |
|
|
| T |
8504763 |
caaacgcaaccactttggacggtgccgagctcttccacatgttttcaaacaccatcttctcaccttcatcccaaacatcttcgctcaacacc |
8504854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 432 - 540
Target Start/End: Complemental strand, 19471721 - 19471613
Alignment:
| Q |
432 |
tttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatct |
531 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| | |||||||| ||| || |||||||||||||| |||| ||| | |||||||| |||||||| |
|
|
| T |
19471721 |
tttcctcttcatcccacaaatcttccttcaacaccactccctccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatct |
19471622 |
T |
|
| Q |
532 |
ccacacatc |
540 |
Q |
| |
|
|||| |||| |
|
|
| T |
19471621 |
ccactcatc |
19471613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 387
Target Start/End: Complemental strand, 46641722 - 46641645
Alignment:
| Q |
310 |
tggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccac |
387 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||| |||||||| ||| | |||||||||||| ||||||||||||| |
|
|
| T |
46641722 |
tggaaggacattccttaacacaaggttatattttgttgctatccgattaagaagtgccttccaagcaaacgccaccac |
46641645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 627
Target Start/End: Original strand, 33291113 - 33291268
Alignment:
| Q |
472 |
ctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaa |
571 |
Q |
| |
|
||||||| || |||| ||||||||||||| ||| |||| || ||||| |||||||||||| |||| ||||||||||||| |||| | || || |
|
|
| T |
33291113 |
ctccaacttcgtgtaggccgacttcaccgtaaaggctcctgaatcgtctaaattccatctccactcatccttctcttgagaccatatcataccttctaag |
33291212 |
T |
|
| Q |
572 |
tcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctcca |
627 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||| |||| || | ||||||||| |
|
|
| T |
33291213 |
tcctccttaagactaaggaataactcctcctcccatgcaaataattgtcttctcca |
33291268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 25846307 - 25846259
Alignment:
| Q |
122 |
ttcttatttctagcctccccacaccaacaatcccaatgaacaaacaaat |
170 |
Q |
| |
|
||||||||||| ||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
25846307 |
ttcttatttctcccctccccactccaatactcccaatgaacaaacaaat |
25846259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University