View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_high_13 (Length: 383)

Name: NF12590_high_13
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_high_13
NF12590_high_13
[»] chr5 (15 HSPs)
chr5 (1-169)||(38443847-38444015)
chr5 (231-366)||(38444023-38444158)
chr5 (68-145)||(38220714-38220794)
chr5 (73-145)||(38170276-38170351)
chr5 (73-145)||(38452559-38452634)
chr5 (256-352)||(38156540-38156636)
chr5 (73-145)||(38182250-38182325)
chr5 (73-145)||(38186063-38186138)
chr5 (73-145)||(38188806-38188881)
chr5 (73-145)||(38209476-38209551)
chr5 (73-145)||(38212219-38212294)
chr5 (73-145)||(38216031-38216106)
chr5 (107-145)||(38156397-38156435)
chr5 (258-351)||(38186213-38186306)
chr5 (258-351)||(38212051-38212144)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 38443847 - 38444015
Alignment:
Q  1 tattctacaactgttttggaattgtaannnnnnnatgtccggtgtagttcactaatgtttctgagtatagtcaattgtatggattcaaatttattaatat 100  Q
    |||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38443847 tattctacaactgttttgaaattgtaattttttgatgtccggtgtagttcactaatgtttctgagtacagtcaattgtatggattcaaatttattaatat 38443946  T
Q  101 attgattttttatcatggatttgtctcatatatttcttccacttaattatctctcctatatgttgttaa 169  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38443947 attggttttttatcatggatctgtctcatatatttcttccacttaattatctctcctatatgttgttaa 38444015  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 38444023 - 38444158
Alignment:
Q  231 gtctgatattgataagcagtacgtagccattagcaatttgaatttggttgataaattttgtgtttgtattttaaattaacacataataaatgaaattaat 330  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||    
T  38444023 gtctgatattgatacgcagtacgtagccattagcaatttgaatttggttgataaattttgtgtttatattttaaattaacacataacaaatgaaatcaat 38444122  T
Q  331 gcatgttatggaagtgaaatttctttaacaaatgaa 366  Q
    ||||||||||||||||||||||||||||||||||||    
T  38444123 gcatgttatggaagtgaaatttctttaacaaatgaa 38444158  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 38220714 - 38220794
Alignment:
Q  68 tagtcaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    |||||||||||| ||||||||||| |||||||||||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38220714 tagtcaattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcactta 38220794  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 38170276 - 38170351
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| |||||||||||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38170276 aattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcactta 38170351  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 38452634 - 38452559
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| |||||||||||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38452634 aattgtacggattcaaattgattaatatattggttcttttttatcatggatttgtctcctatatttcttgcactta 38452559  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 38156540 - 38156636
Alignment:
Q  256 gccattagcaatttgaatttggttgataaattttgtgtttgtattttaaattaacacataataaatgaaattaatgcatgttatggaagtgaaattt 352  Q
    ||||||| |||||| ||||||||| ||||| | | ||||||||||| ||||||||| |||| ||||||||| |||| ||| || |||||| ||||||    
T  38156540 gccattaacaatttaaatttggttaataaaatatttgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaattt 38156636  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 38182325 - 38182250
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38182325 aattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38182250  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 38186063 - 38186138
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38186063 aattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38186138  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 38188806 - 38188881
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38188806 aattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38188881  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 38209551 - 38209476
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38209551 aattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38209476  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 38212294 - 38212219
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38212294 aattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38212219  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 38216031 - 38216106
Alignment:
Q  73 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38216031 aattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38216106  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 38156397 - 38156435
Alignment:
Q  107 tttttatcatggatttgtctcatatatttcttccactta 145  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  38156397 tttttatcatggatttgtctcctatatttcttgcactta 38156435  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 38186213 - 38186306
Alignment:
Q  258 cattagcaatttgaatttggttgataaattttgtgtttgtattttaaattaacacataataaatgaaattaatgcatgttatggaagtgaaatt 351  Q
    ||||| |||| || |||||||||||||| | | ||| | ||| | |||||||||||||| |||||| |  |||| |||||| ||||||||||||    
T  38186213 cattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacacataacaaatgataccaatgtatgttaaggaagtgaaatt 38186306  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 351
Target Start/End: Complemental strand, 38212144 - 38212051
Alignment:
Q  258 cattagcaatttgaatttggttgataaattttgtgtttgtattttaaattaacacataataaatgaaattaatgcatgttatggaagtgaaatt 351  Q
    ||||| |||| || |||||||||||||| | | ||| | ||| | |||||||||||||| |||||| |  |||| |||||| ||||||||||||    
T  38212144 cattaacaatatgcatttggttgataaaatatttgtgtatatctaaaattaacacataacaaatgataccaatgtatgttaaggaagtgaaatt 38212051  T

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