View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_high_30 (Length: 246)
Name: NF12590_high_30
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 41486043 - 41485845
Alignment:
| Q |
40 |
atgctcttctaaatcctccaaaaatctggtggaggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagact |
139 |
Q |
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| T |
41486043 |
atgctcttctaaatcctccaaaaatctggtggtggtgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccacagact |
41485944 |
T |
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| Q |
140 |
gatctccataaaatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
238 |
Q |
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| T |
41485943 |
gatctccataaaatgccaatttcgtccataatttcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
41485845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 41482809 - 41482744
Alignment:
| Q |
173 |
tcttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
238 |
Q |
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| T |
41482809 |
tcttctcgataaggtacatttcagccatatcaccatcatcatccgtaagctattctatttcgtctc |
41482744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 41482929 - 41482811
Alignment:
| Q |
20 |
gttgattcctagcaacactcatgctcttctaaatcctccaaaaatctggtggaggtgaaactggagagactggagaagtgatggatgcactattaactga |
119 |
Q |
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| T |
41482929 |
gttgattcctagcaatgctcaacctcttctaaagcttccgagaatcaggtggggatgaaacgagagagactggagaagagaaggatgcaccatcaactga |
41482830 |
T |
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| Q |
120 |
tc--catatccaaccatag |
136 |
Q |
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| T |
41482829 |
tctatatatccaaccatag |
41482811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 45384916 - 45385079
Alignment:
| Q |
75 |
tgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataaaatgccaatttcgtccataatttc |
174 |
Q |
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| T |
45384916 |
tgaaacaggagagactggaagagagatggatgcaccatcaaccggtctatatccaaccatagactgatctccataaaatgacaattccattcgtcttttc |
45385015 |
T |
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| Q |
175 |
ttctcgatatggtacatttcagctatatcaccatcgtcatccataagctgctctatttcatctc |
238 |
Q |
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| T |
45385016 |
ttctcggtaaggtacatttcagccatatcaccatcatcatccataagctgctctatttcgtctc |
45385079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 5796133 - 5796212
Alignment:
| Q |
75 |
tgaaactggagagactggagaagtgatggatgcactattaactgatccatatccaaccatagactgatctccataaaatg |
154 |
Q |
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| T |
5796133 |
tgaaacgggagagactggataaaagatggatgtgtcatcaactggtctatatccaaccagagactgatctccataaaatg |
5796212 |
T |
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