View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_high_33 (Length: 238)

Name: NF12590_high_33
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_high_33
NF12590_high_33
[»] chr3 (6 HSPs)
chr3 (25-223)||(5877435-5877633)
chr3 (25-223)||(5902052-5902250)
chr3 (25-223)||(5914808-5915006)
chr3 (74-154)||(5980633-5980713)
chr3 (76-154)||(5971772-5971850)
chr3 (88-154)||(5974643-5974709)
[»] chr4 (1 HSPs)
chr4 (86-154)||(4203628-4203696)
[»] chr2 (4 HSPs)
chr2 (85-141)||(17654562-17654618)
chr2 (85-141)||(17728140-17728196)
chr2 (85-141)||(17708776-17708832)
chr2 (85-140)||(17715552-17715607)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 5877633 - 5877435
Alignment:
Q  25 ttccccaggatagctctatgctgtcattttgaaactggagagcggttttacaacacggttttggatttcaagttgaatgtactcatcaatggcactaagc 124  Q
    ||||||||||||||||||||||||  ||||||||||||||||  |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  5877633 ttccccaggatagctctatgctgtttttttgaaactggagagtcgtttgacaatatggttttggatttcaagttgaatgtactcatcaatggcactaagc 5877534  T
Q  125 aactctctacttcatgtgtatacatgttttgtagagaaagaaagacggaccaaaagnnnnnnngtgatctacaatgcaacatggatggtatattctcag 223  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||       |||||||||||||||| |||||||||| ||||||||    
T  5877533 aactctctacttcatgtgtatacatgttttatagaaaaagaaagacggaccaaaagtttttttgtgatctacaatgcaatatggatggtagattctcag 5877435  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 5902250 - 5902052
Alignment:
Q  25 ttccccaggatagctctatgctgtcattttgaaactggagagcggttttacaacacggttttggatttcaagttgaatgtactcatcaatggcactaagc 124  Q
    ||||||||||| ||||||||||||  |||||||| |||||||| |||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  5902250 ttccccaggattgctctatgctgtttttttgaaattggagagctgtttgacaacgtggtgttggatttcaagttgaatgtactcatcaatggcactaagc 5902151  T
Q  125 aactctctacttcatgtgtatacatgttttgtagagaaagaaagacggaccaaaagnnnnnnngtgatctacaatgcaacatggatggtatattctcag 223  Q
    ||||||||||||||| || |||||| | || || | ||||||||||| ||||||||       |||||||||||||||| | ||| |||||||||||||    
T  5902150 aactctctacttcatctgaatacatatattatataaaaagaaagacgcaccaaaagctttgttgtgatctacaatgcaataaggagggtatattctcag 5902052  T

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Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 5915006 - 5914808
Alignment:
Q  25 ttccccaggatagctctatgctgtcattttgaaactggagagcggttttacaacacggttttggatttcaagttgaatgtactcatcaatggcactaagc 124  Q
    |||||||| || ||||||||||||  || |||||||||||||| |||  |||||  |||  |||||||||||||||||||||||||||||||||||||||    
T  5915006 ttccccagaattgctctatgctgtttttgtgaaactggagagctgttacacaacgtggtgctggatttcaagttgaatgtactcatcaatggcactaagc 5914907  T
Q  125 aactctctacttcatgtgtatacatgttttgtagagaaagaaagacggaccaaaagnnnnnnngtgatctacaatgcaacatggatggtatattctcag 223  Q
    |||||||||||||||||| |||||| | || || | ||||||||| | ||||||||       |||||||||||||||| | ||| |||||||||||||    
T  5914906 aactctctacttcatgtgaatacatatattatacaaaaagaaagatgcaccaaaagctttgttgtgatctacaatgcaataaggagggtatattctcag 5914808  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 5980713 - 5980633
Alignment:
Q  74 acaacacggttttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgtgtatacatgtttt 154  Q
    |||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||  |||||| ||||    
T  5980713 acaacatggtgttggatttcaagctgaacgtactcatcaatggcactaagcaactcacttcttcatgtcaatacatatttt 5980633  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 5971850 - 5971772
Alignment:
Q  76 aacacggttttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgtgtatacatgtttt 154  Q
    |||| ||| |||||||| ||||||||| ||||||||||||||||| |||||||   | ||||||||| |||||| ||||    
T  5971850 aacatggtattggattttaagttgaatatactcatcaatggcactgagcaacttatttcttcatgtgaatacatatttt 5971772  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 5974709 - 5974643
Alignment:
Q  88 gatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgtgtatacatgtttt 154  Q
    |||||||| |||||| |||||||||||||||||||  ||||| || ||||||||  |||||| ||||    
T  5974709 gatttcaaattgaatctactcatcaatggcactaataaactcacttcttcatgtaaatacatatttt 5974643  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 4203696 - 4203628
Alignment:
Q  86 tggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgtgtatacatgtttt 154  Q
    ||||| ||||||| |||||| ||||||| ||||||||||||||||||||||| |||| |||||| ||||    
T  4203696 tggatgtcaagttcaatgtagtcatcaacggcactaagcaactctctacttcgtgtgaatacatatttt 4203628  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 17654562 - 17654618
Alignment:
Q  85 ttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgt 141  Q
    |||||||||||||||| ||||||||||||||||||||||||| || || ||||||||    
T  17654562 ttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgt 17654618  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 17728140 - 17728196
Alignment:
Q  85 ttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgt 141  Q
    |||||||||||||||| ||||||||||||||||||||||||| || || ||||||||    
T  17728140 ttggatttcaagttgagtgtactcatcaatggcactaagcaattcacttcttcatgt 17728196  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 17708776 - 17708832
Alignment:
Q  85 ttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatgt 141  Q
    |||||||||||||||| |||||||||||||||||||||| || || || ||||||||    
T  17708776 ttggatttcaagttgagtgtactcatcaatggcactaagaaattcacttcttcatgt 17708832  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 17715552 - 17715607
Alignment:
Q  85 ttggatttcaagttgaatgtactcatcaatggcactaagcaactctctacttcatg 140  Q
    |||||||||||||||| ||| ||||||||||||||| ||||| || || |||||||    
T  17715552 ttggatttcaagttgagtgttctcatcaatggcactgagcaattcacttcttcatg 17715607  T

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