View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_high_38 (Length: 221)
Name: NF12590_high_38
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 46874737 - 46874536
Alignment:
| Q |
3 |
gcttagtctttctacattaatatctcttcaattaacatctattgaaatcaacaaaagacatagcataaacttgaatagtctcttgatgcatcaagataaa |
102 |
Q |
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| T |
46874737 |
gcttagtctttctacattaatatctcttcaattaacatctattgaaatcaacaaaagacatagcataaacttgaatagtctcttgatgcatcaagataaa |
46874638 |
T |
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| Q |
103 |
catagaatcttcaaaattgtggccgtaaatttgaaaaatgactaaattgacttaagttgttcaatttaaggggctaaatacaattcagtccatattttaa |
202 |
Q |
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| T |
46874637 |
catagaatcttcaaaattgtggccgtaaatttgaaaaatgactaaattgacttaagttgttcaatttaaggggctaaatacaattcagtccattttttaa |
46874538 |
T |
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| Q |
203 |
gt |
204 |
Q |
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|| |
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| T |
46874537 |
gt |
46874536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 15504673 - 15504756
Alignment:
| Q |
70 |
aacttgaatagtctcttgatgcatcaagataaacatagaatcttcaaaattgtggccgtaaatttgaaaa-atgactaaattgact |
154 |
Q |
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| T |
15504673 |
aacttaaatagtctcttgttgcatcaagacaaacat--aaactttaaaattgtggtgctaaatttgaaaatatgactaaattgact |
15504756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 13054487 - 13054405
Alignment:
| Q |
66 |
cataaacttgaatagtctcttgatgcatcaagataaacatagaatcttcaaaattgtggccgtaaatttgaaaaatgactaaa |
148 |
Q |
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| T |
13054487 |
catagacttgaatagtcttatgctgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaaaaaatgactaaa |
13054405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 42781206 - 42781250
Alignment:
| Q |
130 |
aatttgaaaaatgactaaattgacttaagttgttcaatttaaggg |
174 |
Q |
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| T |
42781206 |
aatttgaaaaatgaataaattgactaacattgttcaatttaaggg |
42781250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 15801606 - 15801650
Alignment:
| Q |
76 |
aatagtctcttgatgcatcaagataaacatagaatcttcaaaatt |
120 |
Q |
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| T |
15801606 |
aatagtcttttgatgcatcaagacaaacatagaacctttaaaatt |
15801650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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