View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_high_39 (Length: 210)
Name: NF12590_high_39
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 4265796 - 4265971
Alignment:
| Q |
20 |
caagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
119 |
Q |
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| T |
4265796 |
caagcttctattttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
4265895 |
T |
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| Q |
120 |
cttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
195 |
Q |
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| T |
4265896 |
cttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagaattacccctttg |
4265971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 4289927 - 4289752
Alignment:
| Q |
20 |
caagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
119 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289927 |
caagcttctgttttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
4289828 |
T |
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| Q |
120 |
cttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
195 |
Q |
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| T |
4289827 |
cttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
4289752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 4260250 - 4260425
Alignment:
| Q |
20 |
caagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
119 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260250 |
caagcttcttttttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
4260349 |
T |
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| Q |
120 |
cttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttg |
195 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
4260350 |
cttcttttatcaaatcttgggcttacctatgtagaaagcttgaaattgaagtatctgaattagtattacccctttg |
4260425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 4298511 - 4298352
Alignment:
| Q |
20 |
caagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
119 |
Q |
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||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298511 |
caagcttatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaa |
4298412 |
T |
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| Q |
120 |
cttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaat |
179 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||| |
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| T |
4298411 |
cttcttttatcaaatcttgggcttacctatgtagaaatattggaaaggaaatatctgaat |
4298352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 4285197 - 4285109
Alignment:
| Q |
20 |
caagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatgg |
108 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4285197 |
caagctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 4285111 - 4285054
Alignment:
| Q |
137 |
tgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcaccccttt |
194 |
Q |
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| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcaccccttt |
4285054 |
T |
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