View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_high_8 (Length: 473)
Name: NF12590_high_8
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 2572001 - 2571669
Alignment:
| Q |
11 |
cataggtacaaagtaatagtgcatatacggtactaaaactctatagtgtagcaaaattttaacaaactgcaattttctactatatctgctattgacaaag |
110 |
Q |
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| T |
2572001 |
cataggtacaaagtaatagtgcatatacggtactaaaactctatagtgtagcaaaattttaacaaactgcaattttctactatatctgctattgacaaag |
2571902 |
T |
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| Q |
111 |
ctgataacatacatgaaatatcattcatatgattttgattcgaccaacgacgcaataacgaaaatat---atagtaatgaagatactcaatgacgagctt |
207 |
Q |
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| T |
2571901 |
ctgataacatacatgacatatcat-catatgattttgattcgaccaacgacgcaataataaaaatattacatagtaatgaagatactcaatgacgagctt |
2571803 |
T |
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| Q |
208 |
tgaagaaacaatgaaatcttacttcttgattggtataatcttttctggttttgcagtagcatagcttctaaaggaacctcttctacctggtatttgacca |
307 |
Q |
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| T |
2571802 |
tgaagaaacaatgaaatcttacttcttgattggtataatcttttctggttttgcagtagcatagcttctaaaggaacctcttctacctggtatttgacca |
2571703 |
T |
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| Q |
308 |
ctcacccatctcactaaaatcaatttccatgaaa |
341 |
Q |
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| T |
2571702 |
ctcacccatctcactaaaatcaatttccatgaaa |
2571669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 455
Target Start/End: Complemental strand, 2571585 - 2571554
Alignment:
| Q |
424 |
ggcaaataataatatttatttgagggtttatt |
455 |
Q |
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| T |
2571585 |
ggcaaataataatatttatttgagggtttatt |
2571554 |
T |
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