View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_high_9 (Length: 455)
Name: NF12590_high_9
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 154 - 455
Target Start/End: Original strand, 48894266 - 48894567
Alignment:
| Q |
154 |
cagataattgctctaaataagttcttcatgttgttcaaccttaccnnnnnnnggaccagaggataagnnnnnnngagtaggaagatgtggtcagtagaac |
253 |
Q |
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| T |
48894266 |
cagataattgctctaaataagttcttcatgttgttcaaccttaccaaaaaaaggaccagaggataagaaaaaaagagtaggaagatgtggtcattagaac |
48894365 |
T |
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| Q |
254 |
aatcaccaaaaacacacaagtgaaggccaataaattctaatacaaattgttatcataaaaaattaccggttcaaatatgagaggaaataaataatatctg |
353 |
Q |
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| T |
48894366 |
aatcaccaaaaacacacaagtgaaggccaataaattctaatacaaattgttatcataaaaaattaccggttcaaatatgagaggaaataaataatatctg |
48894465 |
T |
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| Q |
354 |
taattaagcaaggtaggaagtagcaactaccttggcttgaatggcttctgtatagtcaagaacgacatcgagcaaggagccagaaaagtgaggaatggaa |
453 |
Q |
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| T |
48894466 |
taattaagcaaggtaggaagtagcaactaccttggcttgaatggcttctgtatagtcaagaacgacatcgagcaaggagccagaaaagtgaggaatggaa |
48894565 |
T |
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| Q |
454 |
gc |
455 |
Q |
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| T |
48894566 |
gc |
48894567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 48894121 - 48894182
Alignment:
| Q |
17 |
gaacatgcattgttatatataggggtcggagttcaaaccttaaatcccaacttattcacctt |
78 |
Q |
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| T |
48894121 |
gaacatgcattgttatatataggggtcggagttcgaacctcaaataccaacttattcacctt |
48894182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 4985783 - 4985819
Alignment:
| Q |
19 |
acatgcattgttatatataggggtcggagttcaaacc |
55 |
Q |
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| T |
4985783 |
acatgcattgttatatataggggtcggggttcgaacc |
4985819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 17557054 - 17557090
Alignment:
| Q |
19 |
acatgcattgttatatataggggtcggagttcaaacc |
55 |
Q |
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| T |
17557054 |
acatgcattgttatatgtaggggtcggggttcaaacc |
17557090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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