View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12590_low_1 (Length: 734)
Name: NF12590_low_1
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_1 |
 | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 3762518 - 3763114
Alignment:
| Q |
1 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
3762518 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagcaaaatt |
3762617 |
T |
|
| Q |
101 |
cattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaa |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3762618 |
cactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaagtcaaa |
3762717 |
T |
|
| Q |
201 |
gggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3762718 |
gggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccac |
3762817 |
T |
|
| Q |
301 |
ttagtatgtcgtgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttc |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3762818 |
ttagtatgtcatgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttc |
3762917 |
T |
|
| Q |
401 |
ttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacattatttggtggaaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3762918 |
ttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacataatttggtggagt |
3763017 |
T |
|
| Q |
501 |
ttgtgaaattgtgatgctaactttgttatctgcttaatgaagtgaagcatatataggaataggaatataaaatggagtggggtagggtcaattatta |
597 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
3763018 |
ttgtgaaaatgtgatgctaactttgttatctgcttagtcaagtgaagcatatataggaataggaaaataaaatggagtgggatagggtcaattatta |
3763114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 3776599 - 3777077
Alignment:
| Q |
1 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaatt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
3776599 |
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagcaaaatt |
3776698 |
T |
|
| Q |
101 |
cattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
3776699 |
cattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaagttaaa |
3776798 |
T |
|
| Q |
201 |
gggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccac |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||| | | |||||||| || ||| ||| |||| ||||||||| || | || || || ||||||| |
|
|
| T |
3776799 |
gggttgtcaatcatgctaactaaaccaaaaaaagt------ggttgagtttacttttgatgatggtggaacaattgcaaccgaagttggattttttccac |
3776892 |
T |
|
| Q |
301 |
ttagtatgtcgtgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttc |
400 |
Q |
| |
|
| | |||||| ||||| || ||| | ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
3776893 |
taactatgtcatgccaatataatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaaaggtatc |
3776992 |
T |
|
| Q |
401 |
ttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacatt |
488 |
Q |
| |
|
||| |||||| ||| |||| || ||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3776993 |
ttctttttctaatgttgaa---gaagtgagtgtgttacaagagataagaaggaagaagaacaaagtgaggaaatgtttggaagacatt |
3777077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 3780912 - 3781393
Alignment:
| Q |
1 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||||||||| | |||||||| |||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
3780912 |
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagcaaaatt |
3781011 |
T |
|
| Q |
101 |
cattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaa |
200 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
3781012 |
cattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaagttaaa |
3781111 |
T |
|
| Q |
201 |
gggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccac |
300 |
Q |
| |
|
||||||||||||||| || ||||||||||| | |||||||| || ||| ||| |||| ||| ||||| || | || || || ||||||| |
|
|
| T |
3781112 |
gggttgtcaatcatgttaaccaaaccaaaagc------ggtggttgagtttacttttgatgatggtggaataattgcaaccgaagttggattttttccac |
3781205 |
T |
|
| Q |
301 |
ttagtatgtcgtgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttc |
400 |
Q |
| |
|
| | | ||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| || |
|
|
| T |
3781206 |
tcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtc |
3781305 |
T |
|
| Q |
401 |
ttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaagacatt |
488 |
Q |
| |
|
|| ||||||||||| | | | ||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
3781306 |
ttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcatt |
3781393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 3751539 - 3752015
Alignment:
| Q |
1 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaatt |
100 |
Q |
| |
|
|||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
3751539 |
caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaagtt |
3751638 |
T |
|
| Q |
101 |
cattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaa |
200 |
Q |
| |
|
||| | || |||||||| | || || |||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| ||||||| |
|
|
| T |
3751639 |
catagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctatagtcaaa |
3751738 |
T |
|
| Q |
201 |
gggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccac |
300 |
Q |
| |
|
|||| |||| |||| |||| |||||||| |||| ||||| || ||| |||||||||||| ||||||||||||||| || || || || |||| |
|
|
| T |
3751739 |
gggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttttcccac |
3751832 |
T |
|
| Q |
301 |
ttagtatgtcgtgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttc |
400 |
Q |
| |
|
| | || || ||||| |||||||| ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3751833 |
tcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaagtttc |
3751932 |
T |
|
| Q |
401 |
ttcattttctgatg------atgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt |
477 |
Q |
| |
|
|| |||||| ||| |||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
3751933 |
ttgtttttctaatgattgtaatgatgttgaagtgagagtgttgcaagagaggagaaggaagaagaacaaagtgagaaaatgtt |
3752015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 3745722 - 3746198
Alignment:
| Q |
1 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaatt |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |
|
|
| T |
3745722 |
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaagt |
3745821 |
T |
|
| Q |
101 |
cattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaa |
200 |
Q |
| |
|
||| | || | |||| | || |||| ||||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| ||| |
|
|
| T |
3745822 |
catagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaaa |
3745921 |
T |
|
| Q |
201 |
gggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccac |
300 |
Q |
| |
|
||||||||||| ||| |||||||||||||| | || |||| || ||| ||||||||| || | |||| |||||||| |||||||| ||||||| |
|
|
| T |
3745922 |
gggttgtcaataatgttgactaaaccaaaagaagta------gttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttccac |
3746015 |
T |
|
| Q |
301 |
ttagtatgtcgtgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttc |
400 |
Q |
| |
|
| | ||||| ||||| ||||||| ||||| ||||| ||||| | ||||||||| |||||| ||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
3746016 |
tcatgatgtcatgccaaaagaatctgaaatgacttagcttttcttggttgtttaggtgtaacaatttggggtctattgaacgaacaaaatcataagtttc |
3746115 |
T |
|
| Q |
401 |
ttcattttc------tgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt |
477 |
Q |
| |
|
||| ||||| || |||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||| |||| |
|
|
| T |
3746116 |
ttctttttcaaatgatggtgatgaagttgaagtgagggtgttgcaagagaagagaaggaagaagaaaaaagtgaggaagtgtt |
3746198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 3755414 - 3755882
Alignment:
| Q |
9 |
acaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtca |
108 |
Q |
| |
|
||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| |||||||||||||||||||||||| | |||||||||||||| | || |
|
|
| T |
3755414 |
acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcatagcca |
3755513 |
T |
|
| Q |
109 |
caagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtc |
208 |
Q |
| |
|
||| ||| | | ||| || | |||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||| ||||||||||| |
|
|
| T |
3755514 |
taagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtc |
3755613 |
T |
|
| Q |
209 |
aatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatg |
308 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||| |||||||| ||||||| | |||| || || || |||||||| |||||||| | |||| |
|
|
| T |
3755614 |
gatcatgcggactgaaccaaaggcagt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggttttttccactcactatg |
3755707 |
T |
|
| Q |
309 |
tcgtgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcatttt |
408 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||| ||| || ||||||||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
3755708 |
tcgtgccagtagaatctgaaatgacttagtttttccttc---tttaggcttaataatttgcggtctataggacgaacaaattcaaaagtgtcaccatttt |
3755804 |
T |
|
| Q |
409 |
ctgatgatgaagttgat---------gtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtt |
477 |
Q |
| |
|
|||||||||| | |||| |||| ||||||||||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
3755805 |
ctgatgatgatgatgatgttgttaaagtgacggtgttgcaagaaagaagaaggaagaagaacaaagtgatgaagtgtt |
3755882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 9 - 490
Target Start/End: Original strand, 3766942 - 3767414
Alignment:
| Q |
9 |
acaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtca |
108 |
Q |
| |
|
||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| |||||||||||||||||||||||| | |||||||||||||| | || |
|
|
| T |
3766942 |
acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcatagcca |
3767041 |
T |
|
| Q |
109 |
caagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtc |
208 |
Q |
| |
|
||| ||| | | ||| || | |||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||| ||||||||||| |
|
|
| T |
3767042 |
taagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtc |
3767141 |
T |
|
| Q |
209 |
aatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatg |
308 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||| ||||| |||| |||| ||| || | || | |||||||| |||||||| | |||| |
|
|
| T |
3767142 |
gatcatgcggactgaaccaaaggcagt-------gttgg----agttt-aatgatggtggaataactacgatagaagtagggttttttccactcactatg |
3767229 |
T |
|
| Q |
309 |
tcgtgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcatttt |
408 |
Q |
| |
|
|| ||||| || ||| | ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||| |
|
|
| T |
3767230 |
tcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgttttt |
3767329 |
T |
|
| Q |
409 |
ctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaag---tgaggaaatgtttggaagacattat |
490 |
Q |
| |
|
||||||| | | | | ||| ||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
3767330 |
ctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattat |
3767414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 141 - 418
Target Start/End: Original strand, 3771304 - 3771572
Alignment:
| Q |
141 |
gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc |
240 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
3771304 |
gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagt----- |
3771398 |
T |
|
| Q |
241 |
cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttagttt |
340 |
Q |
| |
|
||||| || |||||||| ||||||| |||||||| | | | | |||||| |||||||| ||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
3771399 |
-ggttgtgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagttt |
3771497 |
T |
|
| Q |
341 |
ttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatga |
418 |
Q |
| |
|
||||||| ||||||| ||| || ||||||||||| ||||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
3771498 |
ttccttc---tttaggcttaataatttgcggtctataggacgaacaaattcaaaagtgtcatcattttctgatgatga |
3771572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 3763683 - 3763747
Alignment:
| Q |
652 |
tatatcatttggttccattcaatggctgaatcagaatgggtgtgtggcgtggctgttggctcatg |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
3763683 |
tatatcatttggttccattcaatggctgaatcagaatgggtgtatggcgtggttgttggctcatg |
3763747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
| Q |
54 |
atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa |
116 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |
|
|
| T |
3789113 |
atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa |
3789175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 632
Target Start/End: Original strand, 3763523 - 3763563
Alignment:
| Q |
592 |
ttattatggatcaaaaatataaaaagagaactggtcattga |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
3763523 |
ttattatggatcaaaaatataaaaagagaagtgatcattga |
3763563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 3845060 - 3845128
Alignment:
| Q |
48 |
cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa |
116 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||||||| || |||||||||||| ||| ||||||| |
|
|
| T |
3845060 |
cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa |
3845128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 3770737 - 3770799
Alignment:
| Q |
41 |
attcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcat |
103 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
3770737 |
attccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcat |
3770799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
| Q |
52 |
agatagtaatagtacttccattatactttccttcaatcaaagcaaa |
97 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
3851509 |
agatagtaatggtactcccattatactttccttcaaacaaggcaaa |
3851554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 25985591 - 25985274
Alignment:
| Q |
11 |
aggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcaca |
110 |
Q |
| |
|
|||||| ||||||||||||| | | | |||||||||||||| ||||| || || || ||||| ||||| |||||||| | |||||||||||| | || |
|
|
| T |
25985591 |
aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatg |
25985492 |
T |
|
| Q |
111 |
agaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaa |
210 |
Q |
| |
|
| || ||| || ||||||| || |||||||||||||| ||||||||||| | ||| ||||||| || |||||||| || |||||||| |||| |
|
|
| T |
25985491 |
ataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaa |
25985392 |
T |
|
| Q |
211 |
tcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtc |
310 |
Q |
| |
|
||||| ||||||||||||||| | |||||||| |||||| |||||| ||||||||| |||| | |||||| |||||||| | |||||| |
|
|
| T |
25985391 |
tcatgttaactaaaccaaaagcagt------ggttgagt---ttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtc |
25985301 |
T |
|
| Q |
311 |
gtgccagtagaatctaaaatggcttag |
337 |
Q |
| |
|
||||| |||||| | ||||||||||| |
|
|
| T |
25985300 |
atgccaatagaattttaaatggcttag |
25985274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 10088 - 10020
Alignment:
| Q |
48 |
cccaagatagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa |
116 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||||||| || |||||||||||| ||| ||||||| |
|
|
| T |
10088 |
cccaagatagtaattgtgcttccattatatttcccttcaaataatgcaaaattcattatcataagaaaa |
10020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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