View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_10 (Length: 502)

Name: NF12590_low_10
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_10
NF12590_low_10
[»] chr4 (4 HSPs)
chr4 (112-469)||(55907344-55907701)
chr4 (16-73)||(55907245-55907302)
chr4 (294-468)||(532773-532947)
chr4 (401-466)||(661891-661956)
[»] chr2 (4 HSPs)
chr2 (112-450)||(1036086-1036424)
chr2 (254-469)||(1036422-1036637)
chr2 (16-73)||(1035987-1036044)
chr2 (198-247)||(44575173-44575222)
[»] chr5 (1 HSPs)
chr5 (199-267)||(41900247-41900315)
[»] chr6 (1 HSPs)
chr6 (197-240)||(6403858-6403901)
[»] chr3 (1 HSPs)
chr3 (202-267)||(513428-513493)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 112 - 469
Target Start/End: Original strand, 55907344 - 55907701
Alignment:
Q  112 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  212 ctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctattcc 311  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 55907543  T
Q  312 aaaggttcaccaacgttacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgct 411  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55907544 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgct 55907643  T
Q  412 caatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907644 caatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaat 55907701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 55907245 - 55907302
Alignment:
Q  16 cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttc 73  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55907245 cacagaaagtaaaagaagaagaacaacaacaatgaggttgagtaaactggttgctttc 55907302  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 468
Target Start/End: Complemental strand, 532947 - 532773
Alignment:
Q  294 tcctccctcgtctattccaaaggttcaccaacgttacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgccaaataccttttcc 393  Q
    |||||||||| || ||||  || ||||||||| | |||| |||||| ||||    ||||||||||||||||||   ||||||||||||||||  ||||||    
T  532947 tcctccctcgcctcttccgtagattcaccaacctcacctcccttgaccttacaagctacaacggtgacctcaataggcttctctgccaaatatattttcc 532848  T
Q  394 attaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaa 468  Q
     || ||  |||| || ||||||||||| |||||||  | ||| ||||| | ||| |||||||| |||||| ||||    
T  532847 cttcaaactcacatcactcaatctctctaaccaacacaccattcccgcaaatgggttacgagccttctccaaaaa 532773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 466
Target Start/End: Complemental strand, 661956 - 661891
Alignment:
Q  401 atcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaa 466  Q
    ||||| || |||||||||||||||||| | | ||| ||||||| ||| || |||||||||||||||    
T  661956 atcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaa 661891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 112 - 450
Target Start/End: Original strand, 1036086 - 1036424
Alignment:
Q  112 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  212 ctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctattcc 311  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttcc 1036285  T
Q  312 aaaggttcaccaacgttacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgct 411  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036286 aaaggttcaccaacattacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgct 1036385  T
Q  412 caatctctccaaccaacctatcatccccgctactggctt 450  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1036386 caatctctccaaccaacctatcatccccgctactggctt 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 254 - 469
Target Start/End: Original strand, 1036422 - 1036637
Alignment:
Q  254 cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctattccaaaggttcaccaacgttacctaccttgatcttagttcctaca 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  1036422 cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatcttagttcctaca 1036521  T
Q  354 acggtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacg 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036522 acggtgacctcaacgcgcttctctaccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacg 1036621  T
Q  454 agctttctcccaaaat 469  Q
    ||||||||||||||||    
T  1036622 agctttctcccaaaat 1036637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 1035987 - 1036044
Alignment:
Q  16 cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttc 73  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1035987 cacagaaagtaaaagaagaagaagaacaacaatgaggttgaataaactggttgctttc 1036044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 44575173 - 44575222
Alignment:
Q  198 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcacc 247  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcacc 44575222  T

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Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  199 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctct 267  Q
    |||||||||||||||||||  |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 6403901 - 6403858
Alignment:
Q  197 cgctacttgaaatctctctcaaccgtctccaaacagtttctctc 240  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctc 6403858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  202 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcacctacactcttcgattctctct 267  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||| ||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

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