View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_13 (Length: 434)
Name: NF12590_low_13
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 13728866 - 13728657
Alignment:
| Q |
38 |
ttggcattgaaatcttgtagggaaatattaatttttgacattgacttcgaatttgtcagtaactaaacaagtctagactcactcaaacccaaaccgctat |
137 |
Q |
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| T |
13728866 |
ttggcattgaaatcttaaagggaaatcttaatttttgacattgatttcaaatttgtcagtaactacccaagtctagactcgctcaaacccaaaccgctat |
13728767 |
T |
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| Q |
138 |
tgggttagctgatgataaaggatgggacaacaagatatttgagtcagattcccatactttggtacacactgttaggtccctcatcaaggagtttcatagt |
237 |
Q |
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| T |
13728766 |
tggtttagctgctgataaaggttgggacaacaagatatttgagtcagattcccatactttggtacacactgttaggtccctcatcaaggagtttcataat |
13728667 |
T |
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| Q |
238 |
tttatgccat |
247 |
Q |
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| T |
13728666 |
tttataccat |
13728657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 246 - 406
Target Start/End: Complemental strand, 13727204 - 13727043
Alignment:
| Q |
246 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaacaaacacacttgctcatagtcttgctacggcgacctgttcttg |
345 |
Q |
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| T |
13727204 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaacaaacacgcttgctcatagtcttgctacggcgacctgttcttg |
13727105 |
T |
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| Q |
346 |
gtcttgtccccat-atttttgagaattatcctccttgtattgaacatcttttgctacaatat |
406 |
Q |
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| T |
13727104 |
gtcttgtcaccgtaatttttgagaattatcctccttgtattgaacatcttttgctacaatat |
13727043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 5542617 - 5542701
Alignment:
| Q |
312 |
ttgctcatagtcttgctacggcgacctgttcttggtcttgtccccatatttttgagaattatcctccttgtattgaacatctttt |
396 |
Q |
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| T |
5542617 |
ttgctcatacacttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgtactaaacctctttt |
5542701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 49525120 - 49525056
Alignment:
| Q |
323 |
cttgctacggcgacctgttcttggtcttgtccccatatttttgagaattatcctccttgtattga |
387 |
Q |
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| T |
49525120 |
cttgctagggcggtctgttcttggactagtcaccatatttttgagatttgtcctccttgtattga |
49525056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 8670279 - 8670176
Alignment:
| Q |
284 |
aagtttattaggcaacaaacaaacacacttgctcatagtcttgctacggcgacctgttcttggtcttgtccccatatttttgagaattatcctccttgta |
383 |
Q |
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| T |
8670279 |
aagtttgttaggcgacaaacaaacatggttgctcacactcttactagggcggcctgttcttggactagtcaccgtatctttgagatttgtcttccttgta |
8670180 |
T |
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| Q |
384 |
ttga |
387 |
Q |
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|||| |
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| T |
8670179 |
ttga |
8670176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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