View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_15 (Length: 385)
Name: NF12590_low_15
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 127 - 367
Target Start/End: Complemental strand, 34552806 - 34552554
Alignment:
| Q |
127 |
gtcatgttgtttccaactatttaattagggcattcattaactcgttttgcaagcaattcaataggaattcatcaatttattgtaaatatctagt------ |
220 |
Q |
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| T |
34552806 |
gtcatgttgtttccaactatttaattagggcatttattaacttgttttgtaagcaattcaatagaaattcatcaatttatcgtaaatatctagtggtcta |
34552707 |
T |
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| Q |
221 |
-----tatgtgtcttgtatattaatcaatattatgacctattcaccatattttgataggaattaaaactcgagagatgttggagcttaaaagaacaaaga |
315 |
Q |
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| T |
34552706 |
gtagttacgtttcttgtatatgaatcaatattatgacctattcaccatattttgataggaattaaaactcgagagatgttggagcttaaaagaacaaaga |
34552607 |
T |
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| Q |
316 |
agtgatgc-aatagagattctcttagtgatcccacaagttgggagtaaggaat |
367 |
Q |
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| T |
34552606 |
agtgatgcgaacagagattcgcttagtgatcccacgagttgggagcaaggaat |
34552554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 34552923 - 34552885
Alignment:
| Q |
12 |
agagaacatacttgaagcagaatccgtttgttacaactt |
50 |
Q |
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| T |
34552923 |
agagaacatacttgaagtagaatccgtttgttacaactt |
34552885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 44561013 - 44560967
Alignment:
| Q |
143 |
ctatttaattagggcattcattaactcgttttgcaagcaattcaata |
189 |
Q |
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| T |
44561013 |
ctatttaattagggcatttattaacttgttttgcaagtaatacaata |
44560967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 43870527 - 43870439
Alignment:
| Q |
238 |
aatcaatattatgacctattcaccatattttgataggaattaaaactcgagagatgttggagcttaaaagaacaaagaagtgatgcaat |
326 |
Q |
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| T |
43870527 |
aatcaatactatgacctgtttcccatgttttcataggtattaaagctcaagagatgcttgaactgaaaagagcaaagaagtgaagcaat |
43870439 |
T |
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