View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_17 (Length: 377)
Name: NF12590_low_17
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 362
Target Start/End: Complemental strand, 27173663 - 27173308
Alignment:
| Q |
9 |
agcagagagatcaatcaaaatattaattcaacttgataacctatttaaattaattctcatcaaatattacattgattttcgaaaaattgatcatactaga |
108 |
Q |
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| T |
27173663 |
agcagaaagatcaatcaaaatattaattcaacttgataatccatttaaattaattctcatcaaatattacattgattttcaaaaaattgatcatactaga |
27173564 |
T |
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| Q |
109 |
atgatta------aacgaagacaaaagtcttggatcaaattaccaattttaatttcaaaacttacttgatccatcgaaaatttattcaatcatatgatta |
202 |
Q |
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| T |
27173563 |
atgattagtgacaaacgaagacaaaagtcttggatcaacttaccaattttaatttcaaaacttactggatccatcgaaaatttattcaatcatatgatta |
27173464 |
T |
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| Q |
203 |
tcacttatgcattaacaaagtttgcaaatcaaataggtttcgaataaaattggaaaagaaccctaaaattcattcaaaacacactacaaaagccataatc |
302 |
Q |
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| T |
27173463 |
tcacttatgcattaacaaagtttgcaaatcaaataggtttcgaataaaattggaaaagaa-cctaaaattcattcaaaacacactacaaaagccata--- |
27173368 |
T |
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| Q |
303 |
atccaagagtaatgatgtatgattctatatcttggagtcacgagaaattgagaacaagag |
362 |
Q |
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| T |
27173367 |
atccaagagtaatgatgtatgattctatatcttggagtcacgtgaaattgagaacaagag |
27173308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 24288611 - 24288545
Alignment:
| Q |
142 |
ttaccaattttaatttcaaaacttacttgatccatcgaaaatttattcaatcatatgattatcactta |
209 |
Q |
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| T |
24288611 |
ttaccaattttaattgcaaaaca-acttgatccaccgaaactttattcagccatatgattatcactta |
24288545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 38149653 - 38149718
Alignment:
| Q |
143 |
taccaattttaatttcaaaacttacttgatccatcgaaaatttattcaatcatatgattatcactta |
209 |
Q |
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||||||| |||||| |||||| |||||||||| ||||| | |||||| |||||||||||||||||| |
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| T |
38149653 |
taccaatattaattgcaaaaca-acttgatccaccgaaactctattcagtcatatgattatcactta |
38149718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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