View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_18 (Length: 357)
Name: NF12590_low_18
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 26428592 - 26428918
Alignment:
| Q |
13 |
gttcactggttatgtgatgtgtaatttcttcatctttgacttttatttgaaggtgaagctctcccaactttaagttcaaattctctgtagccaatctact |
112 |
Q |
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| T |
26428592 |
gttcactgtttatgtgatgtgtaatttcttcatctttgacttttatttgaaggtgaagctctcccaactttaagttcaaattctctgtagccaatctact |
26428691 |
T |
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| Q |
113 |
agaagttaacatgtcttctaaattctttatcatggtatctgcaaacaaattagcattccataagacaatacaaattagttgcaacttgaagattatgaat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26428692 |
agaagttaacatgtcttctaaattctttatcatggtatctgcaaacaaattagcattccataagacaatacaaattagtagcaacttgaagattatgaat |
26428791 |
T |
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| Q |
213 |
attcactatgatgaagttataaggatttgagggaaagcacgaaaatataaaagagaccaaatagtttaatattaatattgatttgatgtaatatattgtg |
312 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26428792 |
attcactatgatgaagttataaggatttaagggaaagcacgaaaatataaaagagaccaaatagtttaatattaatattgatttgatgtaatatgatgtg |
26428891 |
T |
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| Q |
313 |
gcacagaaggaaaatcctgaacctact |
339 |
Q |
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| T |
26428892 |
gcacagaaggaaaatcctgaacctact |
26428918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 16818592 - 16818463
Alignment:
| Q |
111 |
ctagaagttaacatgtcttctaaattctttatcatggtatctgcaaacaaattagcattccataagacaatacaaattagttgcaacttgaagattatga |
210 |
Q |
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||||||||||||| ||||||| || |||||||||||||||||| |||||||||| ||||||||| | ||||||||||||| ||| ||||||||| || |
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| T |
16818592 |
ctagaagttaacacgtcttctgaactctttatcatggtatctgtaaacaaattaatattccataaaataatacaaattagtaacaagttgaagattctgg |
16818493 |
T |
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| Q |
211 |
atattcactatgatgaagttataaggattt |
240 |
Q |
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|||||||||| |||||| |||||||||||| |
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| T |
16818492 |
atattcactaggatgaaattataaggattt |
16818463 |
T |
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