View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_19 (Length: 343)

Name: NF12590_low_19
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_19
NF12590_low_19
[»] chr7 (7 HSPs)
chr7 (1-170)||(4285164-4285333)
chr7 (6-130)||(4289899-4290023)
chr7 (5-130)||(4260154-4260279)
chr7 (231-325)||(4285394-4285488)
chr7 (1-130)||(4298478-4298607)
chr7 (5-130)||(4265700-4265825)
chr7 (231-325)||(13823672-13823766)
[»] chr8 (5 HSPs)
chr8 (231-325)||(18765269-18765363)
chr8 (231-325)||(27892596-27892690)
chr8 (231-325)||(27904835-27904929)
chr8 (231-325)||(27951254-27951348)
chr8 (231-322)||(22927185-22927276)
[»] chr5 (2 HSPs)
chr5 (231-325)||(23614019-23614113)
chr5 (231-325)||(23845415-23845509)
[»] chr1 (2 HSPs)
chr1 (231-325)||(22120600-22120694)
chr1 (231-325)||(24643041-24643135)
[»] chr6 (1 HSPs)
chr6 (231-325)||(24951955-24952049)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4285164 - 4285333
Alignment:
Q  1 aaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4285164 aaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagc 4285263  T
Q  101 agataaatgattgaaagcagcatgagattctgatgtatgtgatgatgtcgattcttgctttttgcccagc 170  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  4285264 agataaatgattgaaagcagcatgagattctgaagtatgtgatgatgtcgattctttctttttgcccagc 4285333  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 4289899 - 4290023
Alignment:
Q  6 gtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagata 105  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  4289899 gtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagata 4289998  T
Q  106 aatgattgaaagcagcatgagattc 130  Q
    ||||||||||| |||||||||||||    
T  4289999 aatgattgaaatcagcatgagattc 4290023  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 4260279 - 4260154
Alignment:
Q  5 agtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagat 104  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||| ||||     
T  4260279 agtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttaggtaaaaaatcatgaatctgtgtagcttcagaaagattcttaccagag 4260180  T
Q  105 aaatgattgaaagcagcatgagattc 130  Q
    |||||||||||| |||||||||||||    
T  4260179 aaatgattgaaatcagcatgagattc 4260154  T

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Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 4285394 - 4285488
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4285394 aaaggctttggctgatagagaggcgtgtgttagcagattttttaggttggctgctttattgtatatgtaggtctcgttatcttagatttttggaa 4285488  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 4298478 - 4298607
Alignment:
Q  1 aaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagc 100  Q
    |||| |||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |    
T  4298478 aaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaggattcttacc 4298577  T
Q  101 agataaatgattgaaagcagcatgagattc 130  Q
    ||||| || ||||||| ||| || ||||||    
T  4298578 agatagataattgaaatcagaatcagattc 4298607  T

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Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 4265825 - 4265700
Alignment:
Q  5 agtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagat 104  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| | |||||||||| | ||     
T  4265825 agtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtttagcttcagtaagattcttacctgaa 4265726  T
Q  105 aaatgattgaaagcagcatgagattc 130  Q
    | |||||||||| |||||| ||||||    
T  4265725 agatgattgaaatcagcatcagattc 4265700  T

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Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 13823672 - 13823766
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  13823672 aaaggctttggctgatagagaggcgtgtgttagtagatttcttaggttggctgctttattgtatatgtaggtctcattatcttagatttttggaa 13823766  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 18765269 - 18765363
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  18765269 aaaggctttggctgatagagaggcgtgtgttagcagatttcttaggttggctgctttattgtatatgtaggtctcattatcttagatttttggaa 18765363  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 27892690 - 27892596
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  27892690 aaaggcttgggctgatagagaggcgtgcgttagcagattttttaggttggctgctttattgtatatgtaggtctctttatcttagatttttggaa 27892596  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 27904929 - 27904835
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  27904929 aaaggcttgggctgatagagaggcgtgcgttagcagattttttaggttggctgctttattgtatatgtaggtctctttatcttagatttttggaa 27904835  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 27951348 - 27951254
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  27951348 aaaggcttgggctgatagagaggcgtgcgttagcagattttttaggttggctgctttattgtatatgtaggtctctttatcttagatttttggaa 27951254  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 22927276 - 22927185
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttg 322  Q
    |||||||||| ||||||| ||||  |||||||||| |||| |||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  22927276 aaaggctttgcctgatagtgaggcatgtgttagcatatttcttaggttggctgctttattgtatatgtaggtctctttatcttagatttttg 22927185  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 23614019 - 23614113
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  23614019 aaaggctttggctgatagagaggcgtgtgttagcagatttcttaggttggctgctttattgtatatgtaggtctcattatcttagatttttggaa 23614113  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 23845415 - 23845509
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  23845415 aaaggctttggctgatagagaggcgtgtgttagcagatttcttaggttggctgctttattgtatatgtaggtctcattatcttagatttttggaa 23845509  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 22120600 - 22120694
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  22120600 aaaggctttggctgatagagaggcgtgtgttagcagatttcttaggttggctgctttattgtatatgtaggtctcattatcttagatttttggaa 22120694  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 24643041 - 24643135
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  24643041 aaaggctttggctgatagtgaggcgtgtgttagcagatttcttaggttggctgctttattgtatatgtaggtctcattatcttagatttttggaa 24643135  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 24952049 - 24951955
Alignment:
Q  231 aaaggctttggctgatagagaggtgtgtgttagcagattttttaggttggctgctttattgtatatgtagggctagttatcttagatttttggaa 325  Q
    |||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| ||  |||||||||||||||||||    
T  24952049 aaagactttggctgatagagaggcgtgtgttagcagatttcttagggtggctgctttattgtatatgtaggtctcattatcttagatttttggaa 24951955  T

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