View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_21 (Length: 331)
Name: NF12590_low_21
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 80 - 312
Target Start/End: Complemental strand, 25584495 - 25584264
Alignment:
| Q |
80 |
aatttaattaagctttaattcacccccttcaatttttcttatataaaatggcctacatgttccaaccacttcacacagttcactttcttgctgctgccgg |
179 |
Q |
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| T |
25584495 |
aatttaattaagctttaattcacccccttcaatttttcttatataaaatggcctacatgttccaaccacttcacacagttcactttcttgctgctgccgg |
25584396 |
T |
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| Q |
180 |
agctttttctaatcacctttagcaacactttcctccttcaaccttcttttaaggtacacaacaaattattatannnnnnnctatacatcaaataattatg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||||| |
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| T |
25584395 |
agctttttctaatcacctttagcaacactttcctccttcaaccttcttttaaggtacataacaaattattata-ttttttctatatatcaaattattatg |
25584297 |
T |
|
| Q |
280 |
ttagttttcagagtttgaacttgtaatcttttt |
312 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
25584296 |
ttagttttcagagtttgaactcgtaatcttttt |
25584264 |
T |
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