View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_24 (Length: 324)
Name: NF12590_low_24
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 15613138 - 15613436
Alignment:
| Q |
7 |
caatctagacatgcattagcagatagtctttcggtatctatgtagacatatggtttcttgacaacatgaaaatgtgtgtagcagatagcctggaaacaat |
106 |
Q |
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| T |
15613138 |
caatctagacatgcattagcagatagtctttcggtatctatgtagacatatggtttcttgacaacatgaaaatgtgtgtagcagatagcctggaaacaat |
15613237 |
T |
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| Q |
107 |
tttgaatctaccttgtcaggctgctgatgatgagagaatcggacaagtaaatgtgttcttacagagatcaagaattcgggtaagctagcctaatgaatca |
206 |
Q |
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| T |
15613238 |
tttgaatctaccttgtcaggctgctgatgatgagagaattggacaagtaaatgtgttcttacagagatcaagaattcgggtaagctagcctaatgaatca |
15613337 |
T |
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| Q |
207 |
gaaaacgccttgctgagtttgtttccctttagttttagagtcttatgctttgaaaaaagttgtaccgaggttgaaaattcctcggtatgtagacagttt |
305 |
Q |
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| T |
15613338 |
gaaaacgccttgctgagtttgtttctctttagttttagagtcttatgctttgaaaaaggttgtaccgaggttgaaaattcctcggtatgtagacagttt |
15613436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 14669223 - 14669164
Alignment:
| Q |
43 |
tctatgtagacatatggtttcttgacaacatgaaaatgtgtgtagcagatagcctggaaa |
102 |
Q |
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| T |
14669223 |
tctatctagacatatggtttcttgacaagatcaaaatgtgcatatcagatagcctggaaa |
14669164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 14706681 - 14706740
Alignment:
| Q |
43 |
tctatgtagacatatggtttcttgacaacatgaaaatgtgtgtagcagatagcctggaaa |
102 |
Q |
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| T |
14706681 |
tctatctagacatatggtttcttgacaagatcaaaatgtgcatatcagatagccaggaaa |
14706740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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