View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_25 (Length: 318)
Name: NF12590_low_25
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_25 |
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| [»] scaffold0068 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 56 - 305
Target Start/End: Original strand, 10469098 - 10469342
Alignment:
| Q |
56 |
ttcattaaaatgttagtaaataatctgtacattcaattacatttaggcatttatctataacttatagttatccttgggatattgagcatttagacatttt |
155 |
Q |
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| T |
10469098 |
ttcattaaaatgttagtaaataatctgtacatttaattacatttaggcatttatctataacttatagttatccttgggatattgagcatttagacatttt |
10469197 |
T |
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| Q |
156 |
aaaaatatgttacccactcactgaatttctagacacatgttactcattattggattctctaacacgttactttagcttactaacatgcaagttgtgatga |
255 |
Q |
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| T |
10469198 |
aaaaatatgttacccactcactgaatttcaagacacatgttactcattattggattctctaacacg-----ctagcttactaacatgcaagttgtgatga |
10469292 |
T |
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| Q |
256 |
aacaaattcccctttttctcttcatgaaacaatttctctctcatttctga |
305 |
Q |
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| T |
10469293 |
aacaaattcccctttttctcttcatgaaacaatttctctctcatttctga |
10469342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 6717704 - 6717769
Alignment:
| Q |
192 |
atgttactcattattggattctctaacacgttactttagcttactaacatgcaagttgtgatgaaa |
257 |
Q |
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| T |
6717704 |
atgttactcattcttggattctctaacacgtcactttagcttactaacatgcaaggtgtgatgaaa |
6717769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 13576 - 13513
Alignment:
| Q |
60 |
ttaaaatgttagtaaataatctgtacattcaattacatttaggcatttatctataacttatagt |
123 |
Q |
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| T |
13576 |
ttaaaatgttagaaaataatttgtgatttcgattgcatttaagcatttatctataacttatagt |
13513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 28064 - 28000
Alignment:
| Q |
58 |
cattaaaatgttagtaaataatctgtacattcaattacatttaggcatttatctataacttatag |
122 |
Q |
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| T |
28064 |
cattaaaatgttagaatataatttgtgatttcgattgcatttaagcatttatctataacttatag |
28000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 21700334 - 21700397
Alignment:
| Q |
60 |
ttaaaatgttagtaaataatctgtacattcaattacatttaggcatttatctataacttatagt |
123 |
Q |
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| T |
21700334 |
ttaaaatgttagaaaataatttgtgatttcgattgcatttaagcatttatctataacttatagt |
21700397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 21685846 - 21685910
Alignment:
| Q |
58 |
cattaaaatgttagtaaataatctgtacattcaattacatttaggcatttatctataacttatag |
122 |
Q |
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| T |
21685846 |
cattaaaatgttagaatataatttgtgatttcgattgcatttaagcatttatctataacttatag |
21685910 |
T |
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