View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_26 (Length: 315)

Name: NF12590_low_26
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_26
NF12590_low_26
[»] chr4 (17 HSPs)
chr4 (1-306)||(9603945-9604240)
chr4 (56-159)||(2491653-2491756)
chr4 (53-159)||(50908771-50908877)
chr4 (53-159)||(50908584-50908690)
chr4 (71-159)||(11983982-11984070)
chr4 (53-159)||(44468995-44469101)
chr4 (87-159)||(27529986-27530058)
chr4 (52-159)||(11130715-11130822)
chr4 (57-159)||(11983840-11983941)
chr4 (59-158)||(14203929-14204028)
chr4 (53-108)||(25447187-25447242)
chr4 (54-132)||(14204555-14204632)
chr4 (191-250)||(909047-909107)
chr4 (83-159)||(10819621-10819696)
chr4 (53-152)||(11983688-11983787)
chr4 (59-144)||(37082433-37082518)
chr4 (191-230)||(10129750-10129790)
[»] chr8 (4 HSPs)
chr8 (53-159)||(32094989-32095095)
chr8 (52-159)||(32094784-32094891)
chr8 (81-159)||(21598707-21598785)
chr8 (54-132)||(37745142-37745220)
[»] chr5 (17 HSPs)
chr5 (57-159)||(22497242-22497344)
chr5 (53-150)||(13861234-13861331)
chr5 (53-159)||(31289767-31289873)
chr5 (81-159)||(36914071-36914149)
chr5 (53-158)||(40744518-40744623)
chr5 (194-257)||(22431260-22431323)
chr5 (54-143)||(22499274-22499363)
chr5 (53-108)||(22497359-22497414)
chr5 (53-100)||(22498634-22498681)
chr5 (53-98)||(17761778-17761823)
chr5 (53-96)||(22498877-22498920)
chr5 (113-159)||(11562977-11563023)
chr5 (53-159)||(42859090-42859196)
chr5 (113-158)||(22497542-22497587)
chr5 (59-144)||(34992093-34992178)
chr5 (81-153)||(11495393-11495465)
chr5 (52-140)||(22554029-22554117)
[»] chr3 (18 HSPs)
chr3 (53-159)||(32981548-32981654)
chr3 (53-159)||(496000-496106)
chr3 (53-141)||(13661618-13661706)
chr3 (54-153)||(13662066-13662165)
chr3 (54-159)||(12012249-12012354)
chr3 (53-153)||(13662377-13662477)
chr3 (52-159)||(13661704-13661811)
chr3 (53-159)||(31721465-31721571)
chr3 (87-159)||(496128-496200)
chr3 (89-157)||(12012651-12012719)
chr3 (53-151)||(32981239-32981336)
chr3 (62-103)||(4148022-4148063)
chr3 (62-103)||(4148858-4148899)
chr3 (62-103)||(4164627-4164668)
chr3 (59-144)||(4333914-4333999)
chr3 (59-144)||(21631163-21631248)
chr3 (70-159)||(32981679-32981767)
chr3 (191-230)||(30911731-30911771)
[»] chr7 (10 HSPs)
chr7 (54-159)||(29530584-29530689)
chr7 (53-159)||(29237313-29237417)
chr7 (56-159)||(44602643-44602746)
chr7 (94-159)||(12308016-12308081)
chr7 (59-158)||(7668111-7668210)
chr7 (53-136)||(29530454-29530537)
chr7 (59-132)||(19628881-19628954)
chr7 (59-132)||(46735898-46735971)
chr7 (88-159)||(44602886-44602958)
chr7 (59-144)||(46369842-46369927)
[»] chr1 (14 HSPs)
chr1 (56-154)||(29699996-29700095)
chr1 (53-154)||(43763181-43763276)
chr1 (53-136)||(39313407-39313490)
chr1 (53-159)||(34903160-34903266)
chr1 (90-159)||(46997666-46997735)
chr1 (54-153)||(18208574-18208673)
chr1 (191-256)||(26247253-26247319)
chr1 (54-158)||(29700492-29700593)
chr1 (53-159)||(43473105-43473211)
chr1 (59-144)||(41770963-41771048)
chr1 (115-159)||(11332731-11332775)
chr1 (115-159)||(11490752-11490796)
chr1 (52-100)||(30879566-30879614)
chr1 (86-154)||(43762966-43763034)
[»] chr2 (3 HSPs)
chr2 (83-153)||(38858164-38858234)
chr2 (59-132)||(348297-348370)
chr2 (53-159)||(23212694-23212800)
[»] chr6 (6 HSPs)
chr6 (60-144)||(12275074-12275158)
chr6 (53-159)||(14911391-14911500)
chr6 (190-283)||(33623937-33624031)
chr6 (67-136)||(12260033-12260102)
chr6 (191-230)||(16389335-16389375)
chr6 (197-256)||(17179046-17179106)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 9604240 - 9603945
Alignment:
Q  1 tgaattggtgtcttgagctcatcaatgttcttattaatgttgtgtacaatccatctactaacaatctataaaaatcgaaatacaacaaaatttcataatc 100  Q
    ||||||| ||||||||||||||||||||||||||||||||| |            | |||||||||||||||||||||||||||||||||||||||||||    
T  9604240 tgaattgatgtcttgagctcatcaatgttcttattaatgttct------------tcctaacaatctataaaaatcgaaatacaacaaaatttcataatc 9604153  T
Q  101 gtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaannnnnnnnnnnnnnnn---aaagatttaattatggattggt 197  Q
    ||| ||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||                   ||||||| ||||| ||||||||    
T  9604152 gtccttatgaaaattcacgatctttttaattttatatgcatagtggtcattttgcaaaatttaatttatttgttttttaaagatt-aattacggattggt 9604054  T
Q  198 gactcactagttgttaggaagaatctagaataatattgtcgatataagattttgtactctttcattgatagtcatccatgaaattagccattatttttcc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9604053 gactcactagttgttaggaagaatctagaataatattgtcgatataagattttgtactctttcattgatagtcatccatgaaattagccattatttttcc 9603954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 2491653 - 2491756
Alignment:
Q  56 tactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgc 155  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||| |||| || | | |||||||  |||||||||| |||||||||||||||||||    
T  2491653 tactaacaatatataaaaatcgaagtacaccaaaatttcataatcgtccttattaaaattaatgatctccttaattttatgtgcataatggtcattttgc 2491752  T
Q  156 aaaa 159  Q
    ||||    
T  2491753 aaaa 2491756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 50908877 - 50908771
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||| ||| | ||| |||||||||||||||||||| || || | || ||||| ||||| ||||||||||| ||||||| ||||||||    
T  50908877 atctactaacaatatatgaaagttgaagtacaacaaaatttcataatcatcctttttaaaactcacgatctctttaattttatgtgcataaaggtcattt 50908778  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  50908777 tgcaaaa 50908771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 50908690 - 50908584
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||| ||| ||| ||| | ||| ||||||||||||||||||||||| |  | || ||||| |||||  |||||||||| ||||||||||||||||    
T  50908690 atctactaataatatatgaaagttgaagtacaacaaaatttcataatcgtcctctttaaaactcacgatctccttaattttatgtgcataatggtcattt 50908591  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  50908590 tgcaaaa 50908584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 11983982 - 11984070
Alignment:
Q  71 aaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||| ||||||||||||||||||||||||||||||| | || ||||||  |||  |||||||||| |||||||  ||||||||||||||    
T  11983982 aaaaccgaaatacaacaaaatttcataatcgtctttgttaaaactcatagtctccttaattttatgtgcataacagtcattttgcaaaa 11984070  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 44469101 - 44468995
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||| ||| | ||| |||| |||||||||||||||||| |  | || ||||||||||   |||||||||| |||||||| |||||||    
T  44469101 atctactaacaatatatgaaagttgaagtacagcaaaatttcataatcgtcctatttaaaactcatgatcaccttaattttatgtgcataatcgtcattt 44469002  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  44469001 tgcaaaa 44468995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 27529986 - 27530058
Alignment:
Q  87 aaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    ||||||||||||| ||| || | || ||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  27529986 aaaatttcataattgtccttcttaaaactcatgatctctttaattttatgtgcataatggtcatttcgcaaaa 27530058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 11130715 - 11130822
Alignment:
Q  52 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 151  Q
    |||||||||||| | ||||||| |  || |||| |||||||||||||||||| |  | || |||||||||||  || ||||||| ||||||||||||| |    
T  11130715 catctactaacagtatataaaagtttaagtacagcaaaatttcataatcgtcctctttaaaactcatgatctccttgattttatgtgcataatggtcaat 11130814  T
Q  152 ttgcaaaa 159  Q
    ||||||||    
T  11130815 ttgcaaaa 11130822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 11983840 - 11983941
Alignment:
Q  57 actaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgca 156  Q
    ||||||||| ||||||||||||| |||| ||||| |||||||||||||| || || || |||  |||  ||||||||||||||||||  ||||||| |||    
T  11983840 actaacaatatataaaaatcgaagtacatcaaaa-ttcataatcgtcttcattaatacgcatagtctccttaattttatatgcataacagtcatttcgca 11983938  T
Q  157 aaa 159  Q
    |||    
T  11983939 aaa 11983941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 14203929 - 14204028
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaa 158  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || |||||||| |||||||| ||||    
T  14203929 taacaatatataaaaatcaaagtccatcaaaatttcataataatccttattaaaactcattatcttcttaatttcatgtgcataattgtcatttttcaaa 14204028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 25447242 - 25447187
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttat 108  Q
    ||||||||||||| ||||||||| |||  |||||||||||||||||||||| ||||    
T  25447242 atctactaacaatgtataaaaattgaagcacaacaaaatttcataatcgtccttat 25447187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 14204555 - 14204632
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 132  Q
    ||||||||||||  ||||||||| || | || ||||||||||||||||||||||| || |||||| ||||| |||||||    
T  14204555 tctactaacaata-ataaaaatcaaagtccaccaaaatttcataatcgtctttattaaaactcattatcttcttaattt 14204632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 909047 - 909107
Alignment:
Q  191 gattggtgactcactagttg-ttaggaagaatctagaataatattgtcgatataagatttt 250  Q
    |||||||||||| ||||||  ||| ||||| ||||||||||||||||| ||||||||||||    
T  909047 gattggtgactcgctagtttattaagaagagtctagaataatattgtctatataagatttt 909107  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 10819621 - 10819696
Alignment:
Q  83 caacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||||||||||||||||||  ||| || |||||||||||| |||||||| | |||| ||| |||||||| |||||    
T  10819621 caacaaaatttcataatcgtccctattaaaactcatgatcttcttaattttttttgcacaat-gtcattttccaaaa 10819696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 11983688 - 11983787
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| |||||||| |||  |||| ||||| |||||||||||  |||| || ||||||  |||  |||||||||| |||||||  |||||||    
T  11983688 atctactaacaatatataaaaaccgaggtacagcaaaacttcataatcgttcttattaaaactcatagtctccttaattttatgtgcataacagtcattt 11983787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 37082433 - 37082518
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 144  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  37082433 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 37082518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 10129790 - 10129750
Alignment:
Q  191 gattggtgactcactagtt-gttaggaagaatctagaataa 230  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  10129790 gattggtgactcactagtttgttaggaaggatctagaataa 10129750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 32094989 - 32095095
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| |||||||||| || | || |||||||||||||| |||||||| || |||||||||||  |||||||||| ||||||||||||||||    
T  32094989 atctactaacaatatataaaaatcaaagtccagcaaaatttcataatagtctttattaaaactcatgatctccttaattttatgtgcataatggtcattt 32095088  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  32095089 tgcaaaa 32095095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 32094784 - 32094891
Alignment:
Q  52 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 151  Q
    ||||||| |||||| | |||||||||||||  | |||||||||| ||||||| |||| || |||| ||||||  |||||||| | |  ||||||||||||    
T  32094784 catctacaaacaatatgtaaaaatcgaaatctagcaaaatttcaaaatcgtcattattaaaactcttgatctccttaattttttgtatataatggtcatt 32094883  T
Q  152 ttgcaaaa 159  Q
    ||||||||    
T  32094884 ttgcaaaa 32094891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 21598707 - 21598785
Alignment:
Q  81 tacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    ||||||||||||||||||||||| |  | || |||||| |||| ||||||||||| |||||||| ||||||||| ||||    
T  21598707 tacaacaaaatttcataatcgtcctctttaaaactcataatctctttaattttatttgcataatagtcattttgtaaaa 21598785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 37745142 - 37745220
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 132  Q
    |||||||||||| |||||||||| || | || |||||||||||| ||||| |||| || |||||| ||||| |||||||    
T  37745142 tctactaacaatatataaaaatcaaagtccaccaaaatttcatagtcgtccttattaaaactcattatcttcttaattt 37745220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 22497344 - 22497242
Alignment:
Q  57 actaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgca 156  Q
    ||||||||| ||||||||| ||| ||||||||||||| ||||| ||| |||| || ||||||||||| ||||||||||| ||||||||||||| ||||||    
T  22497344 actaacaatatataaaaattgaagtacaacaaaattttataattgtccttattaaaactcatgatctctttaattttatgtgcataatggtcaatttgca 22497245  T
Q  157 aaa 159  Q
    |||    
T  22497244 aaa 22497242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 13861331 - 13861234
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcat 150  Q
    ||||||||||||| ||||||||||||| | || |||||||||||||| |||||||  || | |||||||||  |||||||||| ||||||||||||||    
T  13861331 atctactaacaatatataaaaatcgaagttcagcaaaatttcataattgtctttaataaaattcatgatctccttaattttatgtgcataatggtcat 13861234  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 31289767 - 31289873
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||||| ||| | ||   |||||| ||||||||| |||| || ||||| |||||  |||||||||| ||||||||||||||||    
T  31289767 atctactaacaatttataaaaattgaagtccagtgaaattttataatcgtccttattaaaactcaagatctccttaattttatgtgcataatggtcattt 31289866  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  31289867 tgcaaaa 31289873  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 36914149 - 36914071
Alignment:
Q  81 tacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||||||| |||||||| |||||  | || |||||||||||  |||||||||| |||||||||||||||||||||||    
T  36914149 tacaacaaaagttcataattgtcttctttaaaactcatgatctccttaattttatgtgcataatggtcattttgcaaaa 36914071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 40744518 - 40744623
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||| |  ||||  | ||| |||||||  |||||||||| | |||||| |||||||    
T  40744518 atctagtaacaatatataaaaatcgaaatacaccaaaatttcataatctttcttatttaaacttatgatctccttaattttatgttcataatagtcattt 40744617  T
Q  153 tgcaaa 158  Q
    | ||||    
T  40744618 tacaaa 40744623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 22431260 - 22431323
Alignment:
Q  194 tggtgactcactagttgttaggaagaatctagaataatattgtcgatataagattttgtactct 257  Q
    ||||||||||| |||| |||||||  |||||||||||||||||| ||||||||| |||||||||    
T  22431260 tggtgactcacaagttattaggaaagatctagaataatattgtctatataagatcttgtactct 22431323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 22499363 - 22499274
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataa 143  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||| || |||| || ||| |||| |   |||||||||| |||||||    
T  22499363 tctactaacaatatataaaaattgaactacaacaaaatttcataatcatccttattaaaacttatgaccgccttaattttatgtgcataa 22499274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 22497414 - 22497359
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttat 108  Q
    ||||||||||||| |||||||||| || ||||||||||||||| ||||||| ||||    
T  22497414 atctactaacaatatataaaaatcaaagtacaacaaaatttcacaatcgtccttat 22497359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 22498681 - 22498634
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatc 100  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||    
T  22498681 atctactaacaatctataaaaatcgatgtacaaccaaatttcataatc 22498634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 17761778 - 17761823
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataa 98  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  17761778 atctagtaacaatatataaaaatcgaagtacaacaaaatttcataa 17761823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 22498920 - 22498877
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcat 96  Q
    |||||||||||||  |||||||||||| ||||||||||||||||    
T  22498920 atctactaacaataaataaaaatcgaagtacaacaaaatttcat 22498877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 11563023 - 11562977
Alignment:
Q  113 actcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||| ||||| |||||||||| |||||||| ||||||||||||||    
T  11563023 actcataatcttcttaattttatgtgcataatagtcattttgcaaaa 11562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 42859196 - 42859090
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||||||||| |  | |||||||| | |||| || || | || |||||| ||||  ||||||| ||  ||||||| |||||||    
T  42859196 atctactaacaatatataaaaatcgaagtctagcaaaattttacaatcctcctttttaaaactcattatctccttaatttcatgcgcataatcgtcattt 42859097  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  42859096 tgcaaaa 42859090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 22497587 - 22497542
Alignment:
Q  113 actcatgatctttttaattttatatgcataatggtcattttgcaaa 158  Q
    |||||||||||  |||||||||| ||||||||||| ||||||||||    
T  22497587 actcatgatctccttaattttatgtgcataatggttattttgcaaa 22497542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 34992093 - 34992178
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 144  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  34992093 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 34992178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 11495465 - 11495393
Alignment:
Q  81 tacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 153  Q
    ||||||||||||||||||||||| |  | |  |||||| ||||  ||||||||||||||||| |||| |||||    
T  11495465 tacaacaaaatttcataatcgtcctctttataactcataatctccttaattttatatgcatattggttatttt 11495393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 22554029 - 22554117
Alignment:
Q  52 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgca 140  Q
    |||||||||||||| ||||||||||||| | ||  ||||||||||||| ||| |||  || || ||| ||||  |||||||||| ||||    
T  22554029 catctactaacaatatataaaaatcgaagtccagaaaaatttcataatagtccttactaaaacacataatctccttaattttatgtgca 22554117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 32981654 - 32981548
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||||| | ||| || ||||||||||||||||||||||| || ||||| || ||  |||||||||| |||||||||||| |||    
T  32981654 atctactaacaatatataaaaattgcaatccatcaaaatttcataatcgtctttattaaaactcaagagctccttaattttatgtgcataatggtcgttt 32981555  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  32981554 tgcaaaa 32981548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 496106 - 496000
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| | | ||| | ||| ||||||||||||||||||||||| |  | || |||||||||||  |||| ||||| ||||||||||||||||    
T  496106 atctactaacaatatctgaaagttgaagtacaacaaaatttcataatcgtcctcttcaaaactcatgatctccttaactttatgtgcataatggtcattt 496007  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  496006 tgcaaaa 496000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 13661618 - 13661706
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcat 141  Q
    ||||||||||||| ||||||||||||| | || |||||||||||| ||||  |||| || ||||||||||| ||||||||||| |||||    
T  13661618 atctactaacaatgtataaaaatcgaagtccagcaaaatttcatattcgttcttattaaaactcatgatctctttaattttatgtgcat 13661706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 13662066 - 13662165
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 153  Q
    |||||||| ||| ||||||||| ||| | |||||||| ||||||||| || |||| || |||||||||||  |||||||||| |||||||| ||||||||    
T  13662066 tctactaaaaatatataaaaattgaagtccaacaaaaattcataatcttccttattaaaactcatgatctccttaattttatgtgcataattgtcatttt 13662165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 12012249 - 12012354
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 153  Q
    |||||||||||| ||||||||| ||| |  | ||||||||||||||| || | || || |||||| ||||  ||||||| || |||||||||||||||||    
T  12012249 tctactaacaatatataaaaattgaagtctagcaaaatttcataatcctcctaattaaaactcattatctccttaatttcatgtgcataatggtcatttt 12012348  T
Q  154 gcaaaa 159  Q
    ||||||    
T  12012349 gcaaaa 12012354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 13662377 - 13662477
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    |||||||||||||  |||||||| ||| | ||  |||| |||||||||||| |||| || |||||||||||  |||||||||| |||||||| |||||||    
T  13662377 atctactaacaatgcataaaaattgaagtccagtaaaaattcataatcgtccttattaaaactcatgatctccttaattttatgtgcataattgtcattt 13662476  T
Q  153 t 153  Q
    |    
T  13662477 t 13662477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 13661704 - 13661811
Alignment:
Q  52 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 151  Q
    |||||||||||||  |||||||||  || | |  |||||||||||||||||| |||| || ||||||||| |  |||||||||  |||||||||||||||    
T  13661704 catctactaacaaagtataaaaattaaagtccggcaaaatttcataatcgtccttattaaaactcatgatttccttaattttacgtgcataatggtcatt 13661803  T
Q  152 ttgcaaaa 159  Q
    || |||||    
T  13661804 ttacaaaa 13661811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 31721571 - 31721465
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||||| ||||||||||||||||| ||||||||  | || || ||| |||||||  ||| |||||  ||||||||  ||||||    
T  31721571 atctactaacaatatataaaaattgaaatacaacaaaattttataatcgtgctgattaaaactaatgatctccttacttttacgtgcataattatcattt 31721472  T
Q  153 tgcaaaa 159  Q
    || ||||    
T  31721471 tgaaaaa 31721465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 496200 - 496128
Alignment:
Q  87 aaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||||||||||| || |  | || |||||| ||||  |||||||||| |||||||||||||||||||||||    
T  496200 aaaatttcataatcatcctctttaaaactcattatctccttaattttatgtgcataatggtcattttgcaaaa 496128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 12012719 - 12012651
Alignment:
Q  89 aatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaa 157  Q
    ||||| |||||||||||||| || |||||||||||  || ||||  | |||||||||||||||||||||    
T  12012719 aattttataatcgtctttattaaaactcatgatctccttgatttcttgtgcataatggtcattttgcaa 12012651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 32981336 - 32981239
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 151  Q
    ||||||||||||| ||||||||||||| | |   |||||||||| || ||| |||| || ||||||||| |  | |||||||| |||||||||||||||    
T  32981336 atctactaacaatatataaaaatcgaagtcctttaaaatttcatgattgtccttattaa-actcatgatatcctaaattttatgtgcataatggtcatt 32981239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 4148063 - 4148022
Alignment:
Q  62 caatctataaaaatcgaaatacaacaaaatttcataatcgtc 103  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  4148063 caatatataaaaatctaaatccaacaaaatttcataatcgtc 4148022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 4148899 - 4148858
Alignment:
Q  62 caatctataaaaatcgaaatacaacaaaatttcataatcgtc 103  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  4148899 caatatataaaaatctaaatccaacaaaatttcataatcgtc 4148858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 4164668 - 4164627
Alignment:
Q  62 caatctataaaaatcgaaatacaacaaaatttcataatcgtc 103  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  4164668 caatatataaaaatctaaattcaacaaaatttcataatcgtc 4164627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 4333914 - 4333999
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 144  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  4333914 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 4333999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 21631163 - 21631248
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 144  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  21631163 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 21631248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 32981767 - 32981679
Alignment:
Q  70 aaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||| ||||| ||| |||||||||||| || | |||| || ||||||||| || |||||||||| |||||||| || |||||| ||||    
T  32981767 aaaaattgaaatccaataaaatttcataaacgaccttattaaaactcatgat-ttcttaattttatgtgcataattgttattttgtaaaa 32981679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 30911771 - 30911731
Alignment:
Q  191 gattggtgactcactagtt-gttaggaagaatctagaataa 230  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  30911771 gattggtgactcactagtttgttaggaaggatctagaataa 30911731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 29530689 - 29530584
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 153  Q
    |||||||||||| |||||||||| || || | |||||||||||||||||| |||| || |||||||||||  |||||||||  ||| |||||||||||||    
T  29530689 tctactaacaatatataaaaatcaaagtaaagcaaaatttcataatcgtccttattaaaactcatgatctccttaattttacgtgcgtaatggtcatttt 29530590  T
Q  154 gcaaaa 159  Q
    ||||||    
T  29530589 gcaaaa 29530584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 29237313 - 29237417
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||  |||||  ||| |||||||||||||||||| |  | || |||||||||||  |||||||||| ||||||||||||||||    
T  29237313 atctactaacaatatataaa--tcgaagcacaccaaaatttcataatcgtcctctttaaaactcatgatctccttaattttatgtgcataatggtcattt 29237410  T
Q  153 tgcaaaa 159  Q
    || ||||    
T  29237411 tgtaaaa 29237417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 44602643 - 44602746
Alignment:
Q  56 tactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgc 155  Q
    |||||| ||| ||||||| ||||| ||||  |||||||||| |||||| | || || |||||||||||  |||| ||||| |||||||||||||||||||    
T  44602643 tactaaaaatttataaaattcgaagtacataaaaatttcatgatcgtcctcattaaaactcatgatctccttaactttatgtgcataatggtcattttgc 44602742  T
Q  156 aaaa 159  Q
    ||||    
T  44602743 aaaa 44602746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 12308016 - 12308081
Alignment:
Q  94 cataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||||||| |||| || |||||||||||  ||||||||||||||||||||  ||||||||||||    
T  12308016 cataatcgtccttattaaaactcatgatctccttaattttatatgcataatgagcattttgcaaaa 12308081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 7668210 - 7668111
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaa 158  Q
    |||||||||||||||||  || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || |||||||| |||||||| ||||    
T  7668210 taacaatctataaaaattaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttcatgtgcataattgtcatttttcaaa 7668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 29530537 - 29530454
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttata 136  Q
    ||||||||||||| || ||||||| || | ||| ||||||||||||| ||| |||| || || |||||||| ||||||||||||    
T  29530537 atctactaacaatatacaaaaatctaagtccaaaaaaatttcataattgtcattattaaaacccatgatctctttaattttata 29530454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 19628881 - 19628954
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 132  Q
    ||||||| |||||||||| || | || |||||||||||||||||| |||| || |||||| ||||| |||||||    
T  19628881 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaattt 19628954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 46735971 - 46735898
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 132  Q
    ||||||| |||||||||| || | || |||||||||||||||||| |||| || |||||| ||||| |||||||    
T  46735971 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaattt 46735898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 44602886 - 44602958
Alignment:
Q  88 aaatttcataatcgtctttatgaaga-ctcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||||||||| ||| |||| || | ||||||||||  |||| ||||| |||||||||||||||||||||||    
T  44602886 aaatttcataattgtccttattaaaaactcatgatctccttaactttatgtgcataatggtcattttgcaaaa 44602958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 46369927 - 46369842
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 144  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  46369927 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 46369842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 29699996 - 29700095
Alignment:
Q  56 tactaacaatcta-taaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttg 154  Q
    ||||||||||||| | | ||||||| | || |||||||||||||| ||| |||| || ||||||||||| |||||||| || ||||||||||||||||||    
T  29699996 tactaacaatctactcacaatcgaagttcagcaaaatttcataattgtccttattaaaactcatgatctctttaatttaatgtgcataatggtcattttg 29700095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 43763276 - 43763181
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||||      | || |||||||||||  |||||||||||| ||||| ||||||||    
T  43763276 atctactaacaatatataaaaattgaagtacaacaaaatttcataatcg------ttaaaactcatgatctccttaattttatatccataacggtcattt 43763183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 39313490 - 39313407
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttata 136  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||| |||| |||| || ||| || ||||  |||||||||||    
T  39313490 atctactaacaatatataaaaatcgaaatccaataaaatttcataaccgtccttattaaaactaattatctccttaattttata 39313407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 34903160 - 34903266
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||  | ||||||||||||| |  |  |||||||||||| ||||  ||| || ||| |||||||| |||||||||| ||||||||| ||||||    
T  34903160 atctactaaccgtatataaaaatcgaagtcgagtaaaatttcataaccgtccatattaaaacttatgatcttcttaattttatgtgcataatgatcattt 34903259  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  34903260 tgcaaaa 34903266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 46997735 - 46997666
Alignment:
Q  90 atttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    ||||||||||||||||| | || |||||||||||  |||||||||| |||||||| |||||||| |||||    
T  46997735 atttcataatcgtcttttttaaaactcatgatctcattaattttatgtgcataattgtcattttacaaaa 46997666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 18208673 - 18208574
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 153  Q
    |||||||||||| ||||||| | ||| ||||| || |||||||||||||| |  | || |||||||||||  |||||||||| || ||||||||| ||||    
T  18208673 tctactaacaatatataaaagttgaagtacaataagatttcataatcgtcctctttaaaactcatgatctccttaattttatgtggataatggtcgtttt 18208574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 26247253 - 26247319
Alignment:
Q  191 gattggtgactcactag-ttgttaggaagaatctagaataatattgtcgatataagattttgtactc 256  Q
    ||||| ||||||||||| |||||||||||||  ||||||||||||  | ||||||||| ||||||||    
T  26247253 gattgatgactcactagcttgttaggaagaacatagaataatattaactatataagatattgtactc 26247319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 29700593 - 29700492
Alignment:
Q  54 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 153  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||||  || || | || ||||   ||||  |||| ||||  |||||||||||||||||    
T  29700593 tctactaacaatatataaaaatcgaagtttaacaaaatttcataattttccttgttaaaactc---atctccttaactttacgtgcataatggtcatttt 29700497  T
Q  154 gcaaa 158  Q
    |||||    
T  29700496 gcaaa 29700492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 43473211 - 43473105
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||||||| | | || |||||||| ||||| ||| || | || | |||| ||||| ||||||| || ||  |||||||| |||    
T  43473211 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttcatgtgtttaatggtctttt 43473112  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  43473111 tgcaaaa 43473105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 41770963 - 41771048
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 144  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  41770963 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 41771048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 11332775 - 11332731
Alignment:
Q  115 tcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||||||  |||||||||| ||||||||| |||||||||||||    
T  11332775 tcatgatctccttaattttatgtgcataatgatcattttgcaaaa 11332731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 11490796 - 11490752
Alignment:
Q  115 tcatgatctttttaattttatatgcataatggtcattttgcaaaa 159  Q
    |||||||||  |||||||||| ||||||||| |||||||||||||    
T  11490796 tcatgatctccttaattttatgtgcataatgatcattttgcaaaa 11490752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 30879614 - 30879566
Alignment:
Q  52 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatc 100  Q
    |||||||||||||| ||| ||| | ||| ||||||||||||||||||||    
T  30879614 catctactaacaatatatgaaagttgaagtacaacaaaatttcataatc 30879566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 43763034 - 43762966
Alignment:
Q  86 caaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttg 154  Q
    |||||||||||||||||| |  | ||  ||||||||||  ||||||| || ||||||||||||||||||    
T  43763034 caaaatttcataatcgtcctctttaaagctcatgatctccttaatttaatgtgcataatggtcattttg 43762966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 38858234 - 38858164
Alignment:
Q  83 caacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 153  Q
    |||||||||||||||||| || |||| || |||||||||||  ||||| | || |||||||||||||||||    
T  38858234 caacaaaatttcataatcttccttattaaaactcatgatctccttaatatcatgtgcataatggtcatttt 38858164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 348297 - 348370
Alignment:
Q  59 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 132  Q
    ||||||| |||||||||| || | || |||||||||||||||||| |||| || |||||| ||||| |||||||    
T  348297 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaattt 348370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 23212800 - 23212694
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 152  Q
    ||||||||||||| ||||||||| ||| | || ||||||||||| ||| ||  ||| || || ||  ||||| ||||||| || ||||| ||||| ||||    
T  23212800 atctactaacaatatataaaaattgaagttcatcaaaatttcattatcatccatattaaaacccactatcttcttaatttcatgtgcatgatggttattt 23212701  T
Q  153 tgcaaaa 159  Q
    |||||||    
T  23212700 tgcaaaa 23212694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 12275158 - 12275074
Alignment:
Q  60 aacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 144  Q
    |||||| |||||||| |||| | | | |||||||||||||| || |||| || |||||||||||  |||||||||| ||||||||    
T  12275158 aacaatatataaaaaccgaagttcgataaaatttcataatcatcgttattaaaactcatgatctccttaattttatgtgcataat 12275074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 14911500 - 14911391
Alignment:
Q  53 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctt---tatgaagactcatgatctttttaattttatatgcataatggtca 149  Q
    ||||||||||||| ||||||||||||| | || |||||||| ||||| ||| |   ||| || | |||||||||  ||||| |||| ||||| |||| ||    
T  14911500 atctactaacaatatataaaaatcgaagtccagcaaaattttataattgtcctccttattaaaattcatgatctccttaatattatgtgcatgatggaca 14911401  T
Q  150 ttttgcaaaa 159  Q
    ||||||||||    
T  14911400 ttttgcaaaa 14911391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 33624031 - 33623937
Alignment:
Q  190 ggattggtgactcactagtt-gttaggaagaatctagaataatattgtcgatataagattttgtactctttcattgatagtcatccatgaaatta 283  Q
    |||||| ||||||||||||| ||||||||| ||||| ||||||||| |  ||||||||| || |||| | || || ||| ||||| |||||||||    
T  33624031 ggattgatgactcactagtttgttaggaaggatctaaaataatattttttatataagatcttttactttctcttttataatcatcaatgaaatta 33623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 12260033 - 12260102
Alignment:
Q  67 tataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttata 136  Q
    |||||| ||| |||||||||||||||||||||| ||| |||| || | ||| |||||  |||||||||||    
T  12260033 tataaatatcaaaatacaacaaaatttcataattgtcattattaaaattcaagatctccttaattttata 12260102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 16389375 - 16389335
Alignment:
Q  191 gattggtgactcactagtt-gttaggaagaatctagaataa 230  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  16389375 gattggtgactcactagtttgttaggaaggatctagaataa 16389335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 17179046 - 17179106
Alignment:
Q  197 tgactcactagtt-gttaggaagaatctagaataatattgtcgatataagattttgtactc 256  Q
    ||||||||||||| |||||||||||| |||||||||||||   | ||||||| ||||||||    
T  17179046 tgactcactagtttgttaggaagaatttagaataatattgcatacataagatcttgtactc 17179106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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