View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_29 (Length: 297)
Name: NF12590_low_29
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 14998314 - 14998046
Alignment:
| Q |
18 |
cataggatggctgaaaccactgttatttctttaatttcaacctctagaattgtacataagcaagtttcgttcatccaaaagaaaggaaagtattttcgaa |
117 |
Q |
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| T |
14998314 |
cataggatggctgaaaccactgttatttctttaattgcaacctctagaattgtacataagcaagtttcattcatccaaaagaaaggaaagtattttccaa |
14998215 |
T |
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| Q |
118 |
aaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14998214 |
aaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggct |
14998115 |
T |
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| Q |
218 |
ttcatggttgtatttcattgcattatgaaaaatcagccttacgtcagcatatatctccctcacgttctt |
286 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14998114 |
ttcatggttgtatttcattgcattatgaaatatcagccttacgtcagcatatatctccctcacgttctt |
14998046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 29467136 - 29466867
Alignment:
| Q |
18 |
cataggatggctgaaaccactgttatttctttaatttcaacctctagaattgtacataagcaagtttcgttcatccaaaagaaaggaaagtattttcgaa |
117 |
Q |
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| T |
29467136 |
cataggatggctgaaaccactgttatttctataagtgcaacctctagaattgtacataagcaagtttcattcatcaaaaacaaaggaaagtatttggaaa |
29467037 |
T |
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| Q |
118 |
aaaca-caaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggc |
216 |
Q |
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| T |
29467036 |
aaaaaacaaattaccgccttagcaactttaggcaaaaaatgcagccattacttctcaaatttttccagcaaggtcttagccatcacatggacatcattct |
29466937 |
T |
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| Q |
217 |
tttcatggttgtatttcattgcattatgaaaaatcagccttacgtcagcatatatctccctcacgttctt |
286 |
Q |
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|||||| ||||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29466936 |
tttcatcattgtacttcattgcattcttaaaaatcagccttacatcagcatatatctccctcacgttctt |
29466867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 32191951 - 32192111
Alignment:
| Q |
115 |
gaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatg |
214 |
Q |
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|||||||| |||| ||||||||||||||| |||| ||||| ||||| ||||| ||||||| ||||| | | | || || |||||||||||||||| || |
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| T |
32191951 |
gaaaaaca-aaataaccgccttagcaactgtaggtaaaaggtgcagtcatttattctcaaatttttgtaacgaagtttttgccatcacatggacataatt |
32192049 |
T |
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| Q |
215 |
gctttcatggttgtatttcattgcattatgaaaaatcagccttacgtcagcatatatctccc |
276 |
Q |
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| T |
32192050 |
tatttcattgttatacttcattgcattcttaaatatcagccttacatcaacatatatctccc |
32192111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 32191598 - 32191506
Alignment:
| Q |
90 |
atccaaaagaaaggaaagtattttcgaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttcca |
183 |
Q |
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||||||||||||||||| || ||| | |||||| ||| || ||||| | |||||||||||| |||||||||| |||| ||||||| |||||||| |
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| T |
32191598 |
atccaaaagaaaggaaaataatttgggaaaacaaaaaatatcgcctaa-caactttaggcagaagatgcagctatttattctcaaatttttcca |
32191506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 29872799 - 29872715
Alignment:
| Q |
157 |
gcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcattgcatt |
241 |
Q |
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|||||||||| | |||| |||||||| ||||||||| ||||| |||||||||||||| |||||| |||||| ||||| ||||| |
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| T |
29872799 |
gcagccatttatcttcaaatttttccatcaaggtctttgccattacatggacatcatgtttttcattgttgtacttcatggcatt |
29872715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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