View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_31 (Length: 277)

Name: NF12590_low_31
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_31
NF12590_low_31
[»] chr4 (3 HSPs)
chr4 (17-268)||(24218353-24218604)
chr4 (38-208)||(16843639-16843809)
chr4 (38-268)||(16846307-16846536)
[»] chr5 (13 HSPs)
chr5 (17-268)||(37382948-37383199)
chr5 (17-248)||(37393499-37393730)
chr5 (40-243)||(37701995-37702198)
chr5 (40-241)||(37401643-37401844)
chr5 (40-241)||(37639060-37639261)
chr5 (20-267)||(37593492-37593739)
chr5 (20-267)||(37695883-37696130)
chr5 (40-241)||(37823218-37823419)
chr5 (20-268)||(37532387-37532635)
chr5 (40-243)||(37710816-37711019)
chr5 (17-268)||(37434997-37435248)
chr5 (17-129)||(37413787-37413899)
chr5 (44-268)||(37428339-37428562)
[»] chr3 (1 HSPs)
chr3 (17-248)||(14552679-14552910)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 24218353 - 24218604
Alignment:
Q  17 cccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24218353 cccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtggaatcacttgttctagcaccaaacaatcatttc 24218452  T
Q  117 cgaagatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaa 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  24218453 cgaagatgagaatttacgatgtctctggtaataatttccgtggccccgtgccaacatcttgcctcaagaattttcaaggaatgattaatgtgaatgtcaa 24218552  T
Q  217 taaatctggtttgcaatacatgggtaaggccaattattataatgattctgtg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24218553 taaatctggtttgcaatacatgggtaaggccaattattataatgattctgtg 24218604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 16843639 - 16843809
Alignment:
Q  38 caagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatg 137  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||| | ||||||||||||||||||||| ||  ||||||| ||| |||||||||  ||||    
T  16843639 caagagttacaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatg 16843738  T
Q  138 tctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtg 208  Q
    |||||   ||||||||  ||||| || |||||||||| ||| || | || |||||||||||||| ||||||    
T  16843739 tctctaacaacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtg 16843809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 268
Target Start/End: Original strand, 16846307 - 16846536
Alignment:
Q  38 caagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatg 137  Q
    ||||||||||| |||||||||||| | |||||| | ||| |||||  |||||| |||||||||||||| ||  ||||||| ||  |||||||||  ||      
T  16846307 caagagttacatgtactcagtttaaggtcaaataaactttatggttcaatcacatgttctagcaccaagcatccatttccaaat-tgagaattttggaca 16846405  T
Q  138 tctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacat 237  Q
    |||  | |||||| ||| |||| ||  |||||||||| ||  |||| ||||||||||||||||| || | |||||  |||||| |||||||||| |||||    
T  16846406 tcttcgataacaaattcagtggaccgttgccaacatcatgtatcaagaattttcaaggaatgatgaacgcgaatgataataaaactggtttgcagtacat 16846505  T
Q  238 gggtaaggccaattattataatgattctgtg 268  Q
    ||| |||| |||||| |||||||||||||||    
T  16846506 gggaaaggtcaattactataatgattctgtg 16846536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 37382948 - 37383199
Alignment:
Q  17 cccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttc 116  Q
    ||||||||| | |||  ||| ||||| |||||||| ||||||||| |||||||| | |||||||| | |||||| || ||||||||||||||  ||||||    
T  37382948 cccaattggcttgaaactctacaagaattacaggtgctcagtttaagatcaaataaacttcatggcgcaatcacatgctctagcaccaaacatccatttc 37383047  T
Q  117 cgaagatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaa 216  Q
    | ||| |||||||||  |||||||||   ||||||||   ||| ||| |||||||||| ||| |||| ||||||||||||||||| |||||||||| |||    
T  37383048 ccaagttgagaatttttgatgtctctaacaacaattttattgggcccttgccaacatcgtgcatcaagaattttcaaggaatgatgaatgtgaatgacaa 37383147  T
Q  217 taaatctggtttgcaatacatgggtaaggccaattattataatgattctgtg 268  Q
    |||  ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37383148 taacactggtttgcaatacatgggtaagtccaattactataatgattctgtg 37383199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 37393499 - 37393730
Alignment:
Q  17 cccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttc 116  Q
    ||||||||| |||||  ||| |||||||||||||| || ||||||||||||||||||||||||||   |||||| |||||||||||||| ||  ||||||    
T  37393499 cccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaatcatcttcatgggtcaatcacatgttctagcaccaagcatccatttc 37393598  T
Q  117 cgaagatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaa 216  Q
    | ||| |||||||||| ||||||||| ||||||||||  |||||||| |||||||||| ||| |||| || ||||||||||||||  ||||||||  ||     
T  37393599 ctaagttgagaatttatgatgtctctagtaacaattttagtggccccttgccaacatcatgcttcaagaactttcaaggaatgatggatgtgaataacag 37393698  T
Q  217 taaatctggtttgcaatacatgggtaaggcca 248  Q
      ||  ||||||||||||||||||||| ||||    
T  37393699 ccaaattggtttgcaatacatgggtaaagcca 37393730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 37702198 - 37701995
Alignment:
Q  40 agagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtc 139  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||  |||| |    
T  37702198 agagttacaggtgctgagtttacgatcaaatcatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgcc 37702099  T
Q  140 tctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgg 239  Q
    |||   ||||||||  |||||||| |||||||||| ||| |||| || |||||||||||||||||||| |||| ||| ||| ||| | |||||||||||     
T  37702098 tctaacaacaattttagtggccccttgccaacatcatgcatcaagaactttcaaggaatgattaatgtaaatgacaaaaaaactgatctgcaatacatgc 37701999  T
Q  240 gtaa 243  Q
    ||||    
T  37701998 gtaa 37701995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 37401643 - 37401844
Alignment:
Q  40 agagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtc 139  Q
    ||||||||||||  | ||||||||||||||| |||||||||||| |||||| |||||||||||||| ||  ||||||| ||| |||||||||  ||||||    
T  37401643 agagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtc 37401742  T
Q  140 tctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgg 239  Q
    |||   ||||||||  |||| ||| |||||||||| ||| |||| || |||||||||||||| |||||||||| ||||||  ||||||||||||||||||    
T  37401743 tctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgg 37401842  T
Q  240 gt 241  Q
    ||    
T  37401843 gt 37401844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 37639261 - 37639060
Alignment:
Q  40 agagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtc 139  Q
    ||||||||||||  | ||||||||||||||| |||||||||||| |||||| |||||||||||||| ||  ||||||| ||| |||||||||  ||||||    
T  37639261 agagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtc 37639162  T
Q  140 tctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgg 239  Q
    |||   ||||||||  |||| ||| |||||||||| ||| |||| || |||||||||||||| |||||||||| ||||||  ||||||||||||||||||    
T  37639161 tctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgg 37639062  T
Q  240 gt 241  Q
    ||    
T  37639061 gt 37639060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 37593739 - 37593492
Alignment:
Q  20 aattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccga 119  Q
    |||||| |||||  ||| ||||||||||| || || || |||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| |    
T  37593739 aattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttccta 37593640  T
Q  120 agatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataa 219  Q
    || |||||||||  ||||| |||   ||||||||  |||| ||| |||||||||| ||| |||| || |||||||||||||| |||||||||| ||   |    
T  37593639 agttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagcca 37593540  T
Q  220 atctggtttgcaatacatgggtaaggccaattattataatgattctgt 267  Q
    |  |||||||||||||| ||||  ||   |||| ||||||||||||||    
T  37593539 aattggtttgcaatacaagggtgtgggttattactataatgattctgt 37593492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 37696130 - 37695883
Alignment:
Q  20 aattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccga 119  Q
    |||||| |||||  ||| ||||||||||| || || || |||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| |    
T  37696130 aattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttccta 37696031  T
Q  120 agatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataa 219  Q
    || |||||||||  ||||| |||   ||||||||  |||| ||| |||||||||| ||| |||| || |||||||||||||| |||||||||| ||   |    
T  37696030 agttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagcca 37695931  T
Q  220 atctggtttgcaatacatgggtaaggccaattattataatgattctgt 267  Q
    |  |||||||||||||| |||| | |   |||| ||||||||||||||    
T  37695930 aattggtttgcaatacaagggtgacggttattactataatgattctgt 37695883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 37823419 - 37823218
Alignment:
Q  40 agagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtc 139  Q
    ||||||||||||  | ||||||||||||||| |||||||||||| |||||| |||||||||||||| ||  ||||||| ||| |||||||||  ||||||    
T  37823419 agagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtc 37823320  T
Q  140 tctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgg 239  Q
    |||   ||||||||  |||| ||| |||||||||| ||| |||| || |||||||||||||| ||||||| || | |  ||  |||||||||||||||||    
T  37823319 tctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgagtgacgaccaaattggtttgcaatacatgg 37823220  T
Q  240 gt 241  Q
    ||    
T  37823219 gt 37823218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 37532635 - 37532387
Alignment:
Q  20 aattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccga 119  Q
    |||||| |||||  ||| ||||||||||| || || || |||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| |    
T  37532635 aattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttccta 37532536  T
Q  120 agatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataa 219  Q
    || |||||||||  ||||| |||   ||||||||  |||| ||| |||||| ||| ||| |||| || ||| |||||||||| |||||||||| ||   |    
T  37532535 agttgagaatttttgatgtttctaacaacaattttagtgggcccttgccaatatcatgcatcaagaactttaaaggaatgatgaatgtgaatgacagcca 37532436  T
Q  220 atctggtttgcaatacatgggtaaggccaattattataatgattctgtg 268  Q
    |  |||||||||||||| ||||  ||   |||| |||||||||||||||    
T  37532435 aattggtttgcaatacaagggtgcgggttattactataatgattctgtg 37532387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 37711019 - 37710816
Alignment:
Q  40 agagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtc 139  Q
    ||||||||||||  | ||||||||||||||| |||||||||||| |||||| |||||||||||||| ||  ||||||| ||| |||||||||  ||||||    
T  37711019 agagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtc 37710920  T
Q  140 tctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgg 239  Q
    |||   ||||||||  |||| ||| ||||| |||| ||| |||| || |||||||||||||| || ||||||| ||| |||  || | |||||||||||     
T  37710919 tctaacaacaattttagtgggcccttgccagcatcatgcatcaagaactttcaaggaatgatgaaggtgaatgacaaaaaaattgatctgcaatacatgc 37710820  T
Q  240 gtaa 243  Q
    ||||    
T  37710819 gtaa 37710816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 37435248 - 37434997
Alignment:
Q  17 cccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttc 116  Q
    ||||||||| |||||  ||| |||||||||||||||||||||||| |||||||| | ||| |||||  |||||| ||||||| |||||| ||  | |||     
T  37435248 cccaattggctagaaactctacaagagttacaggtactcagtttaagatcaaataaacttaatggttcaatcacctgttctaacaccaaccatccttttt 37435149  T
Q  117 cgaagatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaa 216  Q
    | ||| | |||||||  ||  |||  |||||||||||  ||||  || |||||||||| ||  |||| || |||||||||||||| ||||||||||  |     
T  37435148 ctaagttaagaatttttgacatcttcggtaacaattttagtggatccttgccaacatcatgtatcaagaactttcaaggaatgatgaatgtgaatgatag 37435049  T
Q  217 taaatctggtttgcaatacatgggtaaggccaattattataatgattctgtg 268  Q
      |   ||||||||||||||||||||||  |||||| |||||||||||||||    
T  37435048 ccagattggtttgcaatacatgggtaagaacaattactataatgattctgtg 37434997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 37413787 - 37413899
Alignment:
Q  17 cccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttc 116  Q
    ||||||||| |||||  ||| |||||||||||||| || ||||||||||||||| |||||||||||| |||||| ||||||||||| || ||  ||||||    
T  37413787 cccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacaaagcatacatttc 37413886  T
Q  117 cgaagatgagaat 129  Q
    | ||| |||||||    
T  37413887 ccaagttgagaat 37413899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 268
Target Start/End: Complemental strand, 37428562 - 37428339
Alignment:
Q  44 ttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtctctg 143  Q
    |||||||| |||| |||| |||||||| | || ||||||  ||||||||||||||  ||||||||  |||| || ||| ||||||||| |||  ||| |     
T  37428562 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaaacatccattccc-aagttgagaattttcgacatctata 37428464  T
Q  144 gtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgggtaa 243  Q
     ||| | |||  |||| ||| |||| ||| | ||| |||  ||||||||||||||||| ||||||||||  |   ||  ||||||||| |||||||||||    
T  37428463 ataaaatttttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa 37428364  T
Q  244 ggccaattattataatgattctgtg 268  Q
    ||||||||| |||||||||||||||    
T  37428363 ggccaattactataatgattctgtg 37428339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 14552910 - 14552679
Alignment:
Q  17 cccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtgaaatcacttgttctagcaccaaacaatcatttc 116  Q
    ||||||||| |||||  ||| ||||||||||| || || ||||||||||||||||||||||| || | |||||| |||||||||| ||| || |||||||    
T  14552910 cccaattggctagaaactctacaagagttacaagtgctaagtttacgatcaaatcatcttcacggagcaatcacctgttctagcatcaagcattcatttc 14552811  T
Q  117 cgaagatgagaatttacgatgtctctggtaacaatttccgtggccccgtgccaacatcctgcctcaataattttcaaggaatgattaatgtgaatgtcaa 216  Q
    | ||| |||||||||  |||||||||   ||||||||  ||||| || |||||||||| ||| |||| || |||||||||||||| || ||||||| ||     
T  14552810 ctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatcaagaactttcaaggaatgatgaacgtgaatgacag 14552711  T
Q  217 taaatctggtttgcaatacatgggtaaggcca 248  Q
      ||  ||||||||||||||||||||| ||||    
T  14552710 ccaaattggtttgcaatacatgggtaaagcca 14552679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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