View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_32 (Length: 264)
Name: NF12590_low_32
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 10337265 - 10337017
Alignment:
| Q |
1 |
taaatatatagccttctttggacggtggagtccaccnnnnnnncccaaaaattattctagcacaagttttaaatagcggtccgaccacgatatttatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337265 |
taaatatatagccttctttggacggtggagtccacctttttttcccaaaaattattctagcacaagttttaaatagcggtccgaccacgatatttatatc |
10337166 |
T |
|
| Q |
101 |
acatgtaattttcgtcgaataagttaatttagtcctaaattacgactgcattatggtcaaagagacataaaaatcatgttctctcaaccataattgtagc |
200 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
10337165 |
acatgtaattttcgtcgaataagttaatttggtcccaaattacgactgcattatggtcaaagagacataaaaatcatgttctctcaaccataattgcaac |
10337066 |
T |
|
| Q |
201 |
cgatcatattttttaaaaaggacaaaacttacgtacattatcttagttg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
10337065 |
cgatcatattttttaaaaaggacaaaacttacgtacaatatcatagttg |
10337017 |
T |
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