View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_35 (Length: 251)

Name: NF12590_low_35
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_35
NF12590_low_35
[»] chr4 (2 HSPs)
chr4 (162-240)||(31265535-31265613)
chr4 (61-95)||(31265434-31265468)
[»] chr5 (1 HSPs)
chr5 (40-92)||(21268752-21268805)
[»] chr7 (1 HSPs)
chr7 (43-92)||(14732482-14732532)
[»] chr6 (1 HSPs)
chr6 (40-92)||(442148-442201)
[»] chr3 (1 HSPs)
chr3 (49-92)||(16133193-16133237)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31265535 - 31265613
Alignment:
Q  162 catagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaatagctttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265535 catagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaatagctttcat 31265613  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 31265434 - 31265468
Alignment:
Q  61 aaagaactaaattaggctcatatatgaaaagaaca 95  Q
    |||||||||||||||||||||||||||||||||||    
T  31265434 aaagaactaaattaggctcatatatgaaaagaaca 31265468  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 21268805 - 21268752
Alignment:
Q  40 ttaatccagcaaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 92  Q
    |||| ||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  21268805 ttaacccaacaaccaaatctgaaggaactaaattaggctcatatcatgaaaaga 21268752  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 14732482 - 14732532
Alignment:
Q  43 atccagcaaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 92  Q
    ||||| ||| |||||||||| |||||||||||||||||||| |||||||||    
T  14732482 atccaacaatcaaatctgaaggaactaaattaggctcatatcatgaaaaga 14732532  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 442201 - 442148
Alignment:
Q  40 ttaatccagcaaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 92  Q
    |||| ||| ||||||||| |||| |||||||||||||||||||| |||||||||    
T  442201 ttaacccaacaaccaaatatgaaggaactaaattaggctcatatcatgaaaaga 442148  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 16133237 - 16133193
Alignment:
Q  49 caaccaaatctgaaagaactaaattaggctcatat-atgaaaaga 92  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  16133237 caaccaaatcttaaggaactaaattaggctcatatcatgaaaaga 16133193  T

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