View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12590_low_37 (Length: 250)
Name: NF12590_low_37
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 14087689 - 14087904
Alignment:
| Q |
20 |
attgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14087689 |
attgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtat |
14087788 |
T |
|
| Q |
120 |
gaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14087789 |
gaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttattgtgatatctaaattacaaaactcctaaa |
14087888 |
T |
|
| Q |
220 |
cattttatagtaatgt |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14087889 |
cattttatagtaatgt |
14087904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 14092212 - 14092436
Alignment:
| Q |
11 |
ctgataccaattgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaata |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14092212 |
ctgatgccaattgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaata |
14092311 |
T |
|
| Q |
111 |
aatttgtatgaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaa |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14092312 |
aatttgtatgaaaaaatgtctaaaaagaaagatgaacttctaataaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaa |
14092411 |
T |
|
| Q |
211 |
actcctaaacattttatagtaatgt |
235 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
14092412 |
actcctaaacattttataataatgt |
14092436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 46454274 - 46454050
Alignment:
| Q |
11 |
ctgataccaattgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaata |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46454274 |
ctgatgccaattgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaata |
46454175 |
T |
|
| Q |
111 |
aatttgtatgaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaa |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454174 |
aatttgtatgaaaaaatgtctaaaaagaaagatgaacttctaataaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaa |
46454075 |
T |
|
| Q |
211 |
actcctaaacattttatagtaatgt |
235 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
46454074 |
actcctaaacattttataataatgt |
46454050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 46461665 - 46461454
Alignment:
| Q |
20 |
attgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtat |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46461665 |
attgttgagcagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtat |
46461566 |
T |
|
| Q |
120 |
gaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaa |
219 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46461565 |
gaaaaa-tgtgtaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactccttaa |
46461467 |
T |
|
| Q |
220 |
cattttatagtaa |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
46461466 |
cattttatagtaa |
46461454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 33681945 - 33681735
Alignment:
| Q |
22 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681945 |
tgttgagtagcagcggaaaatatagacttctaataata---tgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
33681849 |
T |
|
| Q |
122 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaaca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681848 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaaca |
33681749 |
T |
|
| Q |
222 |
ttttatagtaatgt |
235 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33681748 |
ttttatagtaatgt |
33681735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 33699002 - 33698792
Alignment:
| Q |
22 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33699002 |
tgttgagtagcagcggaaaatatagacttctaataata---tgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
33698906 |
T |
|
| Q |
122 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaaca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698905 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaaca |
33698806 |
T |
|
| Q |
222 |
ttttatagtaatgt |
235 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33698805 |
ttttatagtaatgt |
33698792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 24876452 - 24876664
Alignment:
| Q |
22 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876452 |
tgttgagtagcagcggaaaatacagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
24876551 |
T |
|
| Q |
122 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaaca |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876552 |
aaa-atgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaaca |
24876650 |
T |
|
| Q |
222 |
ttttatagtaatgt |
235 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24876651 |
ttttatagtaatgt |
24876664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 24880943 - 24881140
Alignment:
| Q |
11 |
ctgataccaattgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24880943 |
ctgataccaattgttgagtagcagcgtaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaata |
24881042 |
T |
|
| Q |
111 |
aatttgtatgaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24881043 |
aatttgtatg-aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
24881140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 24886289 - 24886392
Alignment:
| Q |
22 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24886289 |
tgttgagtagcagcggaaaatacagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
24886388 |
T |
|
| Q |
122 |
aaaa |
125 |
Q |
| |
|
|||| |
|
|
| T |
24886389 |
aaaa |
24886392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 9955464 - 9955251
Alignment:
| Q |
21 |
ttgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9955464 |
ttgttgagtagcagcggaaaatatagacttctaataataatatgaactatgtactcattaaagttgaacacgaatgtagctagaacaataaatttgtatg |
9955365 |
T |
|
| Q |
121 |
aaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaac |
220 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9955364 |
aaaaa-tgtctaagaagaaaggtgaacttctaattaataaattcactttgttacactctacttgtttttttgtgatatctaaattacaaaactcctaaac |
9955266 |
T |
|
| Q |
221 |
attttatagtaatgt |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9955265 |
attttatagtaatgt |
9955251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 9950416 - 9950263
Alignment:
| Q |
81 |
aagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactcta |
180 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9950416 |
aagttgaacacgaatgtagttagaacaataaatttgtatgaaaaa-tgtctaagaagaaagatgaacttctaattaataaattcactatgttacactcta |
9950318 |
T |
|
| Q |
181 |
cttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9950317 |
cttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgt |
9950263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 46 - 232
Target Start/End: Original strand, 32213508 - 32213697
Alignment:
| Q |
46 |
gacttctaataataatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaaatgtctaagaagaaag |
141 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
32213508 |
gacttctaataatgatatgaaatatgcacttactaaagctgaacacgaaataacttagctagaacaataaacttgtatgaaaa-atgtctaagaagaaag |
32213606 |
T |
|
| Q |
142 |
atgaacttctaattaataaattcactttgttacactctacttg-ttttgttgtgatatctaaattacaaaactcctaaacattttatagtaa |
232 |
Q |
| |
|
|| ||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||| ||||||||| || ||||||||||||||| |
|
|
| T |
32213607 |
ataaacttctaattaataaactcac-ttgttacactctatttgtttttgttgtgatatctaaaatacaaaacttctgaacattttatagtaa |
32213697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 32213385 - 32213273
Alignment:
| Q |
59 |
aatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaat |
154 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
32213385 |
aatatgaaatatgcactcactaaagttgaacacgaaataacatagctagaacaataaacttgtatgaaaaa-tgtctaagaagaaaaatgaacttctaat |
32213287 |
T |
|
| Q |
155 |
taataaattcactt |
168 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
32213286 |
taataaactcactt |
32213273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 9360905 - 9361021
Alignment:
| Q |
54 |
ataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9360905 |
ataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtatg-aaaaatgtctaagaagaaagatgaacttctaa |
9361003 |
T |
|
| Q |
154 |
ttaataaattcactttgt |
171 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9361004 |
ttaataaattcactttgt |
9361021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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