View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_38 (Length: 249)
Name: NF12590_low_38
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 22688834 - 22688618
Alignment:
| Q |
18 |
aatgtaagtgtgtgcataacataatttgaatattgaacatagtttctgaactcattaaacaaatgaatgaatgatttattagggtcattggaaaatcaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688834 |
aatgtaagtgtgtgcataacataatttgaatattggacatagtttctgaactcattaaacaaatgaatgaatgatttattagggtcattggaaaatcaaa |
22688735 |
T |
|
| Q |
118 |
tttccatatacatgaaatttcagccaaattcacacagtacagaaaaatgaatgaaacataacggaacttaacaaaatgttgcgaatcgctgaacccagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688734 |
tttccatatacatgaaatttcagccaaattcacaaagtacagaaaaatgaatgaaacataacggaacttaacaaaatgttgcgaatcgctgaacccagaa |
22688635 |
T |
|
| Q |
218 |
aacaacgtcttgttcat |
234 |
Q |
| |
|
||||||||||||||||| |
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| T |
22688634 |
aacaacgtcttgttcat |
22688618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 22750234 - 22750450
Alignment:
| Q |
18 |
aatgtaagtgtgtgcataacataatttgaatattgaacatagtttctgaactcattaaacaaatgaatgaatgatttattagggtcattggaaaatcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750234 |
aatgtaagtgtgtgcataacataatttgaatatttaacatagtttctgaactcattaaacaaatgaatgaatgatttattagggtcattggaaaatcaaa |
22750333 |
T |
|
| Q |
118 |
tttccatatacatgaaatttcagccaaattcacacagtacagaaaaatgaatgaaacataacggaacttaacaaaatgttgcgaatcgctgaacccagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22750334 |
tttccatatacatgaaatttcagccaaattcacaaagtacagaaaaatgaatgaaacataacggaacttaacaaaatgttgcgaatcgctgaacccagaa |
22750433 |
T |
|
| Q |
218 |
aacaacgtcttgttcat |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
22750434 |
aacaacgtcttgttcat |
22750450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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