View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_4 (Length: 608)
Name: NF12590_low_4
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 46874724 - 46875312
Alignment:
| Q |
1 |
tagaaagactaagcctgtgtttgtttgtgcggcacatatccactagacgcacgtcttgaaagaagctacttagcttttactttttcactgtgtacatggg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46874724 |
tagaaagactaagcttgtgtttgtttgtgcggcacatatccaagagacgcacgtcttgaaagaagctacttagcttttactttttcactgtgta-atggg |
46874822 |
T |
|
| Q |
101 |
tttgaaacgtgcatttggcctcgaagacgtcaaaccaaacatagcctaaattgatagagtttctttaattgaaggaactaatctgttattttacaaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46874823 |
tttgaaacgtgcatttggcctcgaagacgtcaaaccaaacacagcctaaattgatagagtttctttaattgaaggaact-----gttattttacaaattt |
46874917 |
T |
|
| Q |
201 |
aaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttnnnnnnntatgtgaacactctttcaggcaacttctaaagtataa |
300 |
Q |
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| T |
46874918 |
aaaagataaaaatacttgacttttacaattttgaggactaaaatgtcgatttacttaaaaaaatatgtgaacgctctttcagacaacttctaaagtataa |
46875017 |
T |
|
| Q |
301 |
actcttgcaagcccaatgtttgatataagctcctgccagcccaaatgatctttgatacgtaaaagattactctatgcacccggtggattgctcaacctct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875018 |
actcttgcaagcccaatgtttgatataagctcctgccagcccaaatgatctttgatacgtaaaagattactctatgcacccggtggattgctcaacctct |
46875117 |
T |
|
| Q |
401 |
gaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcgtagctcctgataggatttgcgcaatcgagagttacaatcagataaatatga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875118 |
gaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcgtagctcctgataggatttgcgcaatcgagagttacaatcagataaatatga |
46875217 |
T |
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| Q |
501 |
ggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggcaagaaaatctaatgtatcccatgagcaggagtaggatgtacctttg |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875218 |
ggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggcaagaaaatctaatgtatcccatgagcaggagtaggatgtacctttg |
46875312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 23895211 - 23895174
Alignment:
| Q |
370 |
ctctatgcacccggtggattgctcaacctctgaaataa |
407 |
Q |
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| T |
23895211 |
ctctatgcaccccgtggattgctcaacctctgaaataa |
23895174 |
T |
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