View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_41 (Length: 241)
Name: NF12590_low_41
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 20495230 - 20495429
Alignment:
| Q |
32 |
ttctaatcgacaatgaagaatgacttggttaatttgtctatatactatccttacatattaaatcagaacataaataacatattctaagccatgaaaattg |
131 |
Q |
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| T |
20495230 |
ttctaatcgacaatgaagaatgacttggttaatttgtctatatattatccttacatattaaatcagaacataaataacatattctaagccatgacaattg |
20495329 |
T |
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| Q |
132 |
aactttgttgacccatatttcattctccactgtgtaca--------atgaaactatgctgttgtaaaatcagaagtgagctgaattttacaaatattctc |
223 |
Q |
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| T |
20495330 |
aactttgttgacccatatttcattctccactgtgtacaatgaaattatgaaactctgctgttgtaaaatcagaagtgagctgaattttacaaatattctc |
20495429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47643508 - 47643540
Alignment:
| Q |
1 |
acttcttgatgagctttaactgctgcacttttt |
33 |
Q |
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| T |
47643508 |
acttcttgatgagctttaactgctgcacttttt |
47643540 |
T |
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