View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_48 (Length: 226)
Name: NF12590_low_48
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 9581609 - 9581469
Alignment:
| Q |
23 |
ctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtgtgcggcttccttgcggcctagc |
122 |
Q |
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| T |
9581609 |
ctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagc |
9581510 |
T |
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| Q |
123 |
atggtttgctgaggttgggttaggtgggggcagttggagta |
163 |
Q |
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| T |
9581509 |
atggtttgctgaggttgtgttaggtggaggcagttggagta |
9581469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 9587304 - 9587164
Alignment:
| Q |
23 |
ctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtgtgcggcttccttgcggcctagc |
122 |
Q |
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| T |
9587304 |
ctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagc |
9587205 |
T |
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| Q |
123 |
atggtttgctgaggttgggttaggtgggggcagttggagta |
163 |
Q |
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| T |
9587204 |
atggtttgctgaggttgtgttaggtggaggcagttggagta |
9587164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 9569856 - 9569933
Alignment:
| Q |
42 |
tctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtgtgcggcttccttgcggcct |
119 |
Q |
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| T |
9569856 |
tctggaagtttcttcggtcgatcccaccgtttttctgggcagcctccaggcttgttttttgcggcttccttgtggcct |
9569933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 9593384 - 9593296
Alignment:
| Q |
42 |
tctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtgtgcggcttccttgcggcctagcatggtttg |
130 |
Q |
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| T |
9593384 |
tctggaagtgtcttgagtctatcccaccgtttttatgtgcagctttcaggcttgttttgtgcggcttcctcgtggcctatcaaggtttg |
9593296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 9606046 - 9605997
Alignment:
| Q |
42 |
tctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcagg |
91 |
Q |
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| T |
9606046 |
tctggaagtttcttgggtcaatcccactgtttttctgtgcagccttcagg |
9605997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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