View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12590_low_5 (Length: 543)
Name: NF12590_low_5
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12590_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 528
Target Start/End: Original strand, 42701660 - 42702174
Alignment:
| Q |
13 |
agcacagaacactgatattgtcacataaacattagtagtgattttaaaaggaaaaaagtgataggttataaccagcaagtgtttgtgttgtatgtatatc |
112 |
Q |
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| T |
42701660 |
agcacacaacactgatattggcacataaacattagtagtgattttaaaaggaaaaaagtgataggttataaccagcaagtgtttgtgtcgtgtgtatatc |
42701759 |
T |
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| Q |
113 |
aggcagcgtagagtgtcgaacatgtcttttacctaaattctcagtgctacgtagattgtgaggaaagatgataaaattcatacccaaccctgtttgtaac |
212 |
Q |
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| T |
42701760 |
aggcagcgtagagtgtcgaacatgtcttttacctaaattctcagtgctacgtagattgtgaggaaagatgataaaattcatacccaaccctgtttgtaac |
42701859 |
T |
|
| Q |
213 |
gggtgaagaggtcttctgtttgagcattcttaaaagcactgcaagcaatgacataaacccatataagaacaactacagcaacgatgagaataatatttgc |
312 |
Q |
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| T |
42701860 |
gggtgaagaggtcttctgtttgagcattcttaaaagcactgcaagcaatgacataaacccatataagaacaactacagcaacgatgagaataatatttgc |
42701959 |
T |
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| Q |
313 |
tttcctccattcttttcttaggttcccaagtagaccagccttacaagcattacaattgtagcatagctggttctgatcattgttccacaagttgcaatcg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42701960 |
tttcctccattcttttcttaggttcccaagtagaccagccttacaagcattacaattgtagcatagctggttctgatcattgttccacaagttgcaatcg |
42702059 |
T |
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| Q |
413 |
gaatcagccatgggattcacagggtttgtccacattatgggactcacataactgtatccacaaacagttggaggtttgcaacatcctgactgtaaataaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
42702060 |
gaatcagccatgggattcacagggtttgtccacattatgggactcacataactgtatccacaaacagttggaggtttgcaacatcccgactgtaaa-aaa |
42702158 |
T |
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| Q |
513 |
accaatcaaacaaatt |
528 |
Q |
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|||||||||||||||| |
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| T |
42702159 |
accaatcaaacaaatt |
42702174 |
T |
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