View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_6 (Length: 527)

Name: NF12590_low_6
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_6
NF12590_low_6
[»] chr4 (2 HSPs)
chr4 (19-288)||(40614081-40614349)
chr4 (298-364)||(17558824-17558890)
[»] chr1 (3 HSPs)
chr1 (299-364)||(38236310-38236375)
chr1 (297-364)||(6923503-6923570)
chr1 (299-347)||(51387129-51387177)
[»] chr8 (1 HSPs)
chr8 (296-351)||(16367864-16367919)
[»] chr5 (3 HSPs)
chr5 (296-351)||(16349712-16349767)
chr5 (299-364)||(16222680-16222745)
chr5 (299-351)||(4082576-4082628)
[»] chr7 (1 HSPs)
chr7 (299-336)||(7853691-7853728)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 40614081 - 40614349
Alignment:
Q  19 tggtggccatgaatattgatatgatggaagaaggaagaagagtttggagtggctatgtactaatagttgtagaaattaatggaacagggttgggagaaag 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40614081 tggtggccatgaatattgatatggtggaagaaggaagaagagtttggagtggctatgtacaaatagttgtagaaattaatggaacagggttgggagaaag 40614180  T
Q  119 aaacaaagtggagatgnnnnnnnggacagaaattttgttagtgttgtgaaaaacagagaaatggttgctatgtacaacctaaattttcttatgatttggt 218  Q
    |||||||||||| |||       ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  40614181 aaacaaagtggaaatgaaaaaaaggacagaaattttgtgagtgttgtgaaaaacagagaaatggttgctatgtac-acctaaattttctgatgatttggt 40614279  T
Q  219 ttggtccttgtcttctttactttgtttaagacaagactaagctaacctcgtacagttgagctttattata 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40614280 ttggtccttgtcttctttactttgtttaagacaagactaagctaacctcgtacagttgagctttattata 40614349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 17558824 - 17558890
Alignment:
Q  298 aactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 364  Q
    |||||||||||||||||||||   |||||||||||||||| || ||||| || |  |||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatagccaaaaagataatatgaaattcatt 17558890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 38236310 - 38236375
Alignment:
Q  299 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 364  Q
    |||||||||||||||||||||   ||||||||||||||| |||||||||||||  |||| ||||||    
T  38236310 actagatcgtctacccgtgcggcagcacgggtcatatatagctaaaaacattagttgaacttcatt 38236375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 6923570 - 6923503
Alignment:
Q  297 aaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 364  Q
    ||||||||||||||||||||||    ||||||||||||||| |||||||| ||||  |||| ||||||    
T  6923570 aaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaacttcatt 6923503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 51387129 - 51387177
Alignment:
Q  299 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaac 347  Q
    ||||||||||||||||||||   |||||||||||||||| | |||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaac 51387177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 16367919 - 16367864
Alignment:
Q  296 gaaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 351  Q
    |||||||||||||||||||||||   |||||||||||||||| | | |||||||||    
T  16367919 gaaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 16349712 - 16349767
Alignment:
Q  296 gaaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 351  Q
    |||||||||||||| ||||||||   |||||||||||||||| | |||||||||||    
T  16349712 gaaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 16349767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 16222745 - 16222680
Alignment:
Q  299 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 364  Q
    ||||||||||||||||||||   |||||  ||||||||| |||||||||||||  |||| ||||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaacttcatt 16222680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 4082628 - 4082576
Alignment:
Q  299 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 351  Q
    ||||||||||| ||||||||   |||||||||||||||| | |||||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 4082576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 7853728 - 7853691
Alignment:
Q  299 actagatcgtctacccgtgcgaacgcacgggtcatata 336  Q
    |||||||||||||||||||| | |||||||||||||||    
T  7853728 actagatcgtctacccgtgctaccgcacgggtcatata 7853691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University