View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_8 (Length: 512)

Name: NF12590_low_8
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_8
NF12590_low_8
[»] chr1 (17 HSPs)
chr1 (19-493)||(24659158-24659632)
chr1 (19-174)||(46814163-46814318)
chr1 (30-212)||(27031490-27031681)
chr1 (78-212)||(30685573-30685718)
chr1 (91-174)||(31584737-31584820)
chr1 (88-174)||(5459457-5459543)
chr1 (78-172)||(24684192-24684286)
chr1 (78-174)||(24449628-24449724)
chr1 (78-172)||(46692519-46692614)
chr1 (93-206)||(41920759-41920883)
chr1 (79-165)||(6804825-6804912)
chr1 (78-174)||(7002476-7002570)
chr1 (88-212)||(40216155-40216290)
chr1 (78-174)||(5389121-5389217)
chr1 (126-172)||(14320658-14320704)
chr1 (54-119)||(7857917-7857981)
chr1 (235-263)||(6786546-6786574)
[»] chr2 (21 HSPs)
chr2 (19-212)||(5254481-5254684)
chr2 (19-212)||(14106172-14106373)
chr2 (19-212)||(7460906-7461107)
chr2 (45-212)||(14436916-14437092)
chr2 (64-171)||(14405473-14405579)
chr2 (43-174)||(387428-387559)
chr2 (88-174)||(39338559-39338645)
chr2 (19-172)||(7874520-7874657)
chr2 (90-174)||(10524397-10524481)
chr2 (88-174)||(41877250-41877336)
chr2 (126-174)||(3745676-3745724)
chr2 (127-174)||(13512537-13512584)
chr2 (78-161)||(22888603-22888686)
chr2 (128-174)||(43816145-43816191)
chr2 (118-174)||(45311502-45311558)
chr2 (115-174)||(43248925-43248984)
chr2 (174-212)||(7455645-7455683)
chr2 (233-263)||(32745116-32745146)
chr2 (230-263)||(14918363-14918396)
chr2 (174-207)||(15457856-15457889)
chr2 (125-170)||(17116590-17116635)
[»] chr8 (22 HSPs)
chr8 (22-174)||(35815942-35816094)
chr8 (54-171)||(15821077-15821194)
chr8 (74-212)||(3584020-3584170)
chr8 (78-212)||(12897925-12898070)
chr8 (19-174)||(38577484-38577640)
chr8 (78-173)||(36631110-36631205)
chr8 (78-212)||(34388668-34388801)
chr8 (78-207)||(37986509-37986649)
chr8 (78-174)||(27889133-27889229)
chr8 (78-174)||(27947791-27947887)
chr8 (78-174)||(32065983-32066078)
chr8 (78-174)||(20138713-20138809)
chr8 (91-174)||(24995093-24995176)
chr8 (90-174)||(9519805-9519889)
chr8 (78-174)||(31207060-31207156)
chr8 (78-212)||(22773908-22774053)
chr8 (78-207)||(16457129-16457268)
chr8 (88-168)||(41893109-41893188)
chr8 (174-212)||(9659496-9659534)
chr8 (174-212)||(34866309-34866347)
chr8 (121-162)||(10837947-10837988)
chr8 (126-174)||(35821590-35821638)
[»] chr3 (22 HSPs)
chr3 (19-212)||(40023218-40023423)
chr3 (19-174)||(23328046-23328201)
chr3 (54-212)||(50305223-50305392)
chr3 (88-205)||(2392159-2392287)
chr3 (88-205)||(2393922-2394050)
chr3 (43-172)||(45164109-45164234)
chr3 (78-174)||(19176793-19176889)
chr3 (74-174)||(21343631-21343730)
chr3 (88-172)||(31483177-31483261)
chr3 (88-174)||(30352137-30352223)
chr3 (78-174)||(17551244-17551340)
chr3 (78-212)||(34475407-34475552)
chr3 (78-212)||(47235985-47236130)
chr3 (88-174)||(9583751-9583837)
chr3 (43-174)||(43012629-43012760)
chr3 (54-174)||(45399062-45399168)
chr3 (128-172)||(25506770-25506814)
chr3 (106-174)||(50559959-50560027)
chr3 (126-174)||(4463783-4463831)
chr3 (78-172)||(53248187-53248281)
chr3 (172-212)||(45399177-45399217)
chr3 (178-206)||(53248298-53248326)
[»] chr7 (22 HSPs)
chr7 (54-212)||(34391445-34391614)
chr7 (19-212)||(6585112-6585318)
chr7 (78-212)||(31971784-31971929)
chr7 (78-212)||(5859932-5860077)
chr7 (78-174)||(40726203-40726299)
chr7 (78-174)||(47325583-47325678)
chr7 (88-212)||(42454383-42454518)
chr7 (78-174)||(38306547-38306643)
chr7 (104-212)||(48161690-48161808)
chr7 (78-174)||(41089442-41089537)
chr7 (78-174)||(44353262-44353358)
chr7 (78-174)||(10244467-10244563)
chr7 (78-174)||(25161096-25161191)
chr7 (78-174)||(33434529-33434625)
chr7 (88-174)||(3867412-3867498)
chr7 (52-138)||(35745556-35745640)
chr7 (89-206)||(3419054-3419180)
chr7 (89-147)||(3419381-3419439)
chr7 (78-174)||(37795283-37795379)
chr7 (78-174)||(37795611-37795707)
chr7 (174-212)||(40726140-40726178)
chr7 (125-174)||(43482239-43482288)
[»] chr4 (20 HSPs)
chr4 (88-174)||(35329304-35329390)
chr4 (19-212)||(2826012-2826213)
chr4 (78-174)||(27555629-27555725)
chr4 (78-174)||(30964724-30964820)
chr4 (78-173)||(20464876-20464971)
chr4 (43-174)||(31050359-31050488)
chr4 (104-174)||(35341051-35341121)
chr4 (103-165)||(52868819-52868881)
chr4 (78-170)||(8255314-8255406)
chr4 (78-170)||(8268732-8268824)
chr4 (125-165)||(8705847-8705887)
chr4 (82-174)||(11281423-11281515)
chr4 (126-174)||(46698477-46698525)
chr4 (76-161)||(4305992-4306075)
chr4 (125-212)||(7703021-7703118)
chr4 (88-174)||(36689503-36689589)
chr4 (126-174)||(49528421-49528469)
chr4 (229-263)||(12704936-12704970)
chr4 (140-206)||(9750116-9750192)
chr4 (88-149)||(30167288-30167349)
[»] chr5 (10 HSPs)
chr5 (78-205)||(29087765-29087896)
chr5 (78-212)||(18593529-18593674)
chr5 (78-165)||(34378386-34378473)
chr5 (126-212)||(41250854-41250939)
chr5 (88-174)||(7161712-7161798)
chr5 (88-165)||(698664-698741)
chr5 (125-165)||(7452922-7452962)
chr5 (90-174)||(5656791-5656875)
chr5 (130-174)||(18255148-18255192)
chr5 (133-173)||(18313353-18313393)
[»] scaffold0434 (1 HSPs)
scaffold0434 (78-174)||(2371-2467)
[»] scaffold0085 (1 HSPs)
scaffold0085 (78-172)||(48622-48716)
[»] chr6 (6 HSPs)
chr6 (78-212)||(3254244-3254389)
chr6 (78-165)||(15944286-15944373)
chr6 (94-174)||(10542134-10542214)
chr6 (126-174)||(33697795-33697843)
chr6 (78-174)||(3117781-3117877)
chr6 (235-267)||(24118291-24118323)
[»] scaffold0172 (1 HSPs)
scaffold0172 (78-207)||(19205-19345)
[»] scaffold0343 (1 HSPs)
scaffold0343 (78-206)||(5991-6131)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 24659158 - 24659632
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24659158 gacgatgggtggttatggttactgtgtttacaatgtttgtttcttttaaggtgtccatcttaggtggttatgtgttttggtgggtttatcttcaggggct 24659257  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcgcgtcttgcggggatgacgtttaataatatttgctgattnnnnnn 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||          
T  24659258 ttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgcgtcttgcggggatgacgtttaataatatttgctgattaaaaaa 24659357  T
Q  219 nntaaatactacaactatttaaagtgttcaagaaatgttccaacacgttttgatttgttgtttgtgacattcaatctggactttatgcaattattgtagt 318  Q
       |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24659358 aaaaaatactacaactatttaaagtgttcaagaaatgttccaacatgttttgatttgctgtttgtgacattcaatctggactttatgcaattattgtagt 24659457  T
Q  319 agataatagttgactttataatacactctaatattagatacatgtggtctacatatatataatatagactcaggacaaatggttggaatttagatgaagc 418  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24659458 agataatagttgactttataatacactctaatattggatacatgtggtctacatatatataatatagactcaggacaaatggttggaatttagatgaagc 24659557  T
Q  419 attctttgcttggattgcaattcgactatcataagtttgacatctagctgtgtacaaaaagaagaaatatatctc 493  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24659558 attctttgcttggattgcaatttgactatcataagtttgacatctagctgtgtacaaaaagaagaaatatatctc 24659632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 46814318 - 46814163
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    ||||||||  |||| ||| |||| ||||||||  |||||||||| ||||||||||  ||||||||| | |||||||||||| ||||||||||||||||||    
T  46814318 gacgatggacggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttggtaggtttatcttcaggggct 46814219  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  46814218 ttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 46814163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 27031681 - 27031490
Alignment:
Q  30 gttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtgg 129  Q
    ||||||| |||| ||||||||  |||||||||| ||||||||||| ||||||||| | ||||||||||| ||  ||||||||| ||||||||| ||| ||    
T  27031681 gttatggatactgtgtttacagggtttgtttctgttaaggtgtccgtcttaggtggtgatgtgttttggggg--ttatcttcaagggctttgtatggggg 27031584  T
Q  130 ttatggtgtaccgtctatatgcagcaccatttgtattttgtt-----------tcgcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||||| ||||||| ||||||||| ||| |||||           | |||||||||| |||||||||||||||||||||| |||||    
T  27031583 ttatggtgtaccgtatatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatttgatgatt 27031490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 30685718 - 30685573
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | |||||||||||||||||||||||||||||  || || ||||||||||||||||| ||||||||| ||||||||||||| |||||||        
T  30685718 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtcc 30685619  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           |||||||||||||||||||||||||||||||||| ||||    
T  30685618 ataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 31584820 - 31584737
Alignment:
Q  91 tgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||||||||||||||||  || || ||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  31584820 tgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcg 31584737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 5459457 - 5459543
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||| |||||||||||||||  || || ||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  5459457 atgtgttttggtgagtttatcttcaggggtatttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatgttgcttcg 5459543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 24684286 - 24684192
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    ||||||| | |||||||||||||||||||||||||||||  || || |||| |||||||||||||||||||||  ||||||||||||| ||||||    
T  24684286 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtgattatggtgtaccgtctatatgtggcaccatttgtatcttgttt 24684192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 24449724 - 24449628
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | ||||||||||||| ||||||||  |||||  || ||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24449724 ttaggtggtgatgtgttttggtgtgtttatctctaggggtgtttttatgtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcg 24449628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 46692614 - 46692519
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgttt-ggtggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    ||||||| | ||||||||||| |||||||||||||||||  || ||| ||||||||||||||||||||| ||||| ||||||||| ||| ||||||    
T  46692614 ttaggtggtgatgtgttttggagggtttatcttcaggggtgttttttaggtggttatggtgtaccgtctttatgcggcaccatttttatcttgttt 46692519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 41920759 - 41920883
Alignment:
Q  93 ttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg-----------cgtcttg 181  Q
    ||||||| |||||||||||| |||  || || |||||||| ||||||||||||||||||||||| ||||||||||| |||||           |||||||    
T  41920759 ttttggttggtttatcttcacgggtgtttttaggtggttacggtgtaccgtctatatgcagcacaatttgtattttatttcgtccataccttacgtcttg 41920858  T
Q  182 cggggatgacgtttaataatatttg 206  Q
    ||| |||||||||||||||||||||    
T  41920859 cggagatgacgtttaataatatttg 41920883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 6804825 - 6804912
Alignment:
Q  79 taggtgattatgtgttttggtgggtttatcttcaggggctttgttt-ggtggttatggtgtaccgtctatatgcagcaccatttgtat 165  Q
    |||||| | ||||||||||||||| ||||| || |||  ||| ||| ||||||||||||||||||||||||||| |||||||||||||    
T  6804825 taggtggtgatgtgttttggtgggattatcctcggggtttttttttaggtggttatggtgtaccgtctatatgcggcaccatttgtat 6804912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 7002476 - 7002570
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | ||||||||||||||||||||||  ||||  ||| ||  |||||||||||||||||| ||||||| ||||| ||||||| ||||||||    
T  7002476 ttaggtggtgatgtgttttggtgggtttatctctaggg--ttttttaagtggttatggtgtaccgtttatatgcggcaccttttgtatcttgtttcg 7002570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 40216290 - 40216155
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg-----------cg 176  Q
    |||||||| |||||||| |||| |||  |  || || |||||||||| |||||||||||||||| ||||||||||||| ||| ||||           ||    
T  40216290 atgtgtttcggtgggttaatctccagatgtgtttttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgattcgtccatatctggcg 40216191  T
Q  177 tcttgcggggatgacgtttaataatatttgctgatt 212  Q
    ||||||| ||||||||||||||||||||||||||||    
T  40216190 tcttgcgaggatgacgtttaataatatttgctgatt 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 5389217 - 5389121
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||| |||||||||  |||||  || || ||||||||| |||| |||||||||||| ||||||||||||| || |||||    
T  5389217 ttaggtggtgatgtgttttggttggtttatctctaggggtgtttttaggtggttatagtgtgccgtctatatgcggcaccatttgtatcttatttcg 5389121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 14320658 - 14320704
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||    
T  14320658 gtggttatggtgtaccgtctatatgcgacaccatttgtatttggttt 14320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 7857917 - 7857981
Alignment:
Q  54 tttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctt 119  Q
    ||||||||| ||||||||||| ||||||||||| ||||| || |||||| |||||||||| |||||    
T  7857917 tttgtttctgttaaggtgtccgtcttaggtgatgatgtgattcggtggg-ttatcttcagaggctt 7857981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 6786546 - 6786574
Alignment:
Q  235 atttaaagtgttcaagaaatgttccaaca 263  Q
    |||||||||||||||||||||||||||||    
T  6786546 atttaaagtgttcaagaaatgttccaaca 6786574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 5254481 - 5254684
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    |||||||||||||| ||| |||| |||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||| | |||    
T  5254481 gacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggtggtgatgtgttttggtgggtttatcttcatgagct 5254580  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg-----------cgtcttgcggggatgacgtttaataatatttgc 207  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |  |||||           ||||||||| |||||||||||||||||||||||    
T  5254581 ttgtttggaggttatggtgtaccgtctatatgcggcaccatttgtatcta-tttcgtccataccttacgtcttgcgaggatgacgtttaataatatttgc 5254679  T
Q  208 tgatt 212  Q
    |||||    
T  5254680 tgatt 5254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 14106373 - 14106172
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    ||||||| |||||| ||| |||| |||||||||||||||||||| ||||||||||| ||||||||| |  |||||||||||||| ||||||||||||||     
T  14106373 gacgatgagtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtccgtcttaggtggtgttgtgttttggtggg-ttatcttcaggggc- 14106276  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc----------gcgtcttgcggggatgacgtttaataatatttgct 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||          |||||||||| ||||| ||||||||||||||||||    
T  14106275 ttgtttggtggttatggtgtaccgtctatatgcggcaccatttctatcttgtttcgtcataccctgcgtcttgcgaggatggcgtttaataatatttgct 14106176  T
Q  209 gatt 212  Q
    ||||    
T  14106175 gatt 14106172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 7460906 - 7461107
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    ||||||| |||||| ||| || | |||||||| ||||||||||| ||||||||||| ||||||| | |  |||| ||||||||||| |||||||||||||    
T  7460906 gacgatgtgtggttgtggatattgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggcggtgttgtgatttggtgggtt-atcttcaggggct 7461004  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc----------gcgtcttgcggggatgacgtttaataatatttgct 208  Q
    | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  7461005 t-gtttggtggttatggtgtactgtctatatgcaacaccatttgtattttgtttcgtcatactctgcgtcttgcggggatgacgtttaataatatttgct 7461103  T
Q  209 gatt 212  Q
    ||||    
T  7461104 gatt 7461107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 14437092 - 14436916
Alignment:
Q  45 tttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtc 144  Q
    |||||| ||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||||||||    
T  14437092 tttacagtgtttgtttctgttaaggtgttcgtcttaggtgatgatgtgatttggtgggtt-atcttcaggagctt-gtttggttgttatggtgtaccgtc 14436995  T
Q  145 tatatgcagcaccatttgtattttgtttc-----------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    ||||||| ||||||||||||| |||||||           |||||||||||||||| ||||||||||||||||||||||    
T  14436994 tatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 14405473 - 14405579
Alignment:
Q  64 ttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgt 163  Q
    ||||||||||| ||||||||| | |||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14405473 ttaaggtgtccgtcttaggtggtgatgtgttttggtaggtt-atctttaggggctttgttaggtggttatggtgtaccgtctatatgcagcaccatttgt 14405571  T
Q  164 attttgtt 171  Q
    || |||||    
T  14405572 atcttgtt 14405579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 387428 - 387559
Alignment:
Q  43 tgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccg 142  Q
    ||||||||||| |||||| | | |||| |||  | ||||||| | ||||||||||||||||||||||||| |||  || ||  |||||||||||||||||    
T  387428 tgtttacaatgcttgtttttgtgaaggagtctgttttaggtggtgatgtgttttggtgggtttatcttcatgggtgtttttaagtggttatggtgtaccg 387527  T
Q  143 tctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||| ||||||||||||| ||||||||    
T  387528 tctatatgcggcaccatttgtatcttgtttcg 387559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 39338645 - 39338559
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||||||||||||  || |  ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  39338645 atgtgttttggtgggtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 39338559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 7874520 - 7874657
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    |||||||||||||| ||| |||| |||||||| ||||||||||| | ||||||||| ||||||||||                |||||| ||||||||||    
T  7874520 gacgatgggtggttgtggatactgtgtttacagtgtttgtttctgtcaaggtgtccgtcttaggtga----------------gtttatattcaggggct 7874603  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| ||||||    
T  7874604 ttgtttggtggttatggtgtaccgtctatatgcggcgccatttgtatcttgttt 7874657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 10524397 - 10524481
Alignment:
Q  90 gtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||||||||||  || || ||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  10524397 gtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgctgcaccatttgtatattgtttcg 10524481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 41877336 - 41877250
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||| | |||||||||||||||||  || |  ||||||||||||||||||||||||| | | ||||||||||| ||||||||    
T  41877336 atgtgttttagagggtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatacggtaccatttgtatattgtttcg 41877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 3745676 - 3745724
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  3745676 gtggttatgatgtaccatctatatgcagcaccatttgtatcttgtttcg 3745724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 13512584 - 13512537
Alignment:
Q  127 tggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  13512584 tggttatgttgtaccgtctatatgcggcatcatttgtattttgtttcg 13512537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 22888686 - 22888603
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccattt 161  Q
    ||||||| | ||| |||||||||||||||||||||||||  || || | |||||||| | |||||||||||||  |||||||||    
T  22888686 ttaggtggtgatgcgttttggtgggtttatcttcaggggtgttcttagttggttatgatataccgtctatatgtggcaccattt 22888603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 43816191 - 43816145
Alignment:
Q  128 ggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||    
T  43816191 ggttatggtgtaccgtctatatgcggcatcatttgtactttgtttcg 43816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 45311558 - 45311502
Alignment:
Q  118 tttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| ||||||||||||| |||| ||||||  ||||||||||||| ||||||||    
T  45311558 tttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcg 45311502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 43248984 - 43248925
Alignment:
Q  115 ggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||| ||||||| | |||||||||||||| || |||||| ||| ||||||||    
T  43248984 ggctttgtttgggggttatgatataccgtctatatgcggcgccatttatatcttgtttcg 43248925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 7455645 - 7455683
Alignment:
Q  174 gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  7455645 gcgtcttgcggggatgacgtttaatattatttactgatt 7455683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 32745146 - 32745116
Alignment:
Q  233 ctatttaaagtgttcaagaaatgttccaaca 263  Q
    |||||||||||||||||||||||||||||||    
T  32745146 ctatttaaagtgttcaagaaatgttccaaca 32745116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 14918396 - 14918363
Alignment:
Q  230 caactatttaaagtgttcaagaaatgttccaaca 263  Q
    |||| |||||||||||||||||||||||||||||    
T  14918396 caacaatttaaagtgttcaagaaatgttccaaca 14918363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 15457856 - 15457889
Alignment:
Q  174 gcgtcttgcggggatgacgtttaataatatttgc 207  Q
    |||||||||||||||||||||||||| |||||||    
T  15457856 gcgtcttgcggggatgacgtttaatattatttgc 15457889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 17116635 - 17116590
Alignment:
Q  125 ggtggttatggtgtaccgtctatatgcagcaccatttgtattttgt 170  Q
    ||||||||| ||||||||||||||||| ||| ||||||||| ||||    
T  17116635 ggtggttatagtgtaccgtctatatgcggcatcatttgtatcttgt 17116590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 35816094 - 35815942
Alignment:
Q  22 gatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttg 121  Q
    ||||||||||| ||| |||| |||||||||||||||||||| ||||||||||  ||||| ||| | ||| ||||||||||||||||||||| ||||||||    
T  35816094 gatgggtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtctgtcttaagtggtgatgggttttggtgggtttatcttcatgggctttg 35815995  T
Q  122 tttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||| |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  35815994 tttgggggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcg 35815942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 15821194 - 15821077
Alignment:
Q  54 tttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcag 153  Q
    ||||||||| ||||||||||  ||||||||| | |||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||| |    
T  15821194 tttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttggtggttttatcttcaggggttttatttggtggttatggtataccgtctatatgcgg 15821095  T
Q  154 caccatttgtattttgtt 171  Q
    |||||||||||| |||||    
T  15821094 caccatttgtatcttgtt 15821077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 3584020 - 3584170
Alignment:
Q  74 catcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtat-tttgtt- 171  Q
    ||||||| ||| | |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||     
T  3584020 catcttaagtggtgatgtgtgttggtgggtttatcttaaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatctttgttt 3584119  T
Q  172 ----------tcgcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
              |||||||||| ||||||| ||||||||||||||||||||||    
T  3584120 cgttcatacctcgcgtcttgtggggatggcgtttaataatatttgctgatt 3584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 12898070 - 12897925
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | |||||||||||||||||||||||||||||  || || |||||| |||||||||||||||||||| ||||||||||||| |||||||        
T  12898070 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggtaatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 12897971  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           || ||||||||||||||||||||||||||||||| ||||    
T  12897970 atatcttgcatcttgcggggatgacgtttaataatatttgccgatt 12897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 38577640 - 38577484
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgttt-gtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggc 117  Q
    |||||||| || || ||| |||| |||||||| ||||| |||| | || |||||||| ||||||||| | ||||||||||||||||||||||||| |       
T  38577640 gacgatggatgattgtggatactgtgtttacagtgttttgtttatatttaggtgtccgtcttaggtggtgatgtgttttggtgggtttatcttcatgtat 38577541  T
Q  118 tttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||| |||||  |||||||||||||||| ||| ||||||||| ||||||||    
T  38577540 tttgtttggtagttattttgtaccgtctatatgcggcatcatttgtatattgtttcg 38577484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 36631110 - 36631205
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc 173  Q
    ||||||| | |||||||||||||||||||||||||||||  || || |||| |||||||||||||||||||||| ||||||||||||| |||||||    
T  36631110 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtgattatggtgtaccgtctatatgcggcaccatttgtatcttgtttc 36631205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 34388801 - 34388668
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcgcgt 177  Q
    ||||||| | |||||||||| |||||||||||||| |||  || || |||||||||||||||||||||||||||||||| |||||||| ||   | ||||    
T  34388801 ttaggtggtgatgtgttttgctgggtttatcttcacgggtgtttttaggtggttatggtgtaccgtctatatgcagcactatttgtatcttacgttgcgt 34388702  T
Q  178 cttgcggggatgacgtttaataatatttgctgatt 212  Q
    ||||  |||||||| ||||||||||||||| ||||    
T  34388701 cttg-tgggatgacatttaataatatttgccgatt 34388668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 37986649 - 37986509
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | |||||||||  |||||||||||| |||||  || || ||||||||||||||||||||||||||||||||||||||||| |||||||        
T  37986649 ttaggtggtgatgtgttttaatgggtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtcc 37986550  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgc 207  Q
           |||||||||||||||||| |||||||||||||||    
T  37986549 gtgccttgcgtcttgcggggatgacatttaataatatttgc 37986509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 27889133 - 27889229
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||| ||||||  || || |||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  27889133 ttaggtggtgatgtgttttggtgggtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcg 27889229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 27947791 - 27947887
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||| ||||||  || || |||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  27947791 ttaggtggtgatgtgttttggtgggtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcg 27947887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 32066078 - 32065983
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||||||||||  || || ||||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  32066078 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggttat-gtgtaccgtctatatgcggcaccatttgtatcttgtttcg 32065983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 20138713 - 20138809
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||| || |||  || || ||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  20138713 ttaggtggtgatgtgttttggtgggtttatctccatgggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcg 20138809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 24995176 - 24995093
Alignment:
Q  91 tgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||||||||||||||||  || || |||||||||||||||| ||||||| || ||||||||||||| ||||||||    
T  24995176 tgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtactgtctataagcggcaccatttgtatcttgtttcg 24995093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 9519805 - 9519889
Alignment:
Q  90 gtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||||||||| |||||||  || || |||||||||| ||||| |||||||||| ||||||||||||| ||||||||    
T  9519805 gtgttttggtgggtttatcatcaggggtgtttttaggtggttatgatgtactgtctatatgcggcaccatttgtatcttgtttcg 9519889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 31207156 - 31207060
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | ||||||||||||| ||||||||||||| |  || || ||||||||||||||||||| ||||| | ||||||||||||| ||||||||    
T  31207156 ttaggtggtgatgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtttatatacggcaccatttgtatcttgtttcg 31207060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 22773908 - 22774053
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | || ||||||||||||||||||||||  ||  || || | ||||||||||||||||||||||||| ||||||||||||| | |||||        
T  22773908 ttaggtggtgatatgttttggtgggtttatcttcactggtgtttttagatggttatggtgtaccgtctatatgcggcaccatttgtatctagtttcgtcc 22774007  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           |||||||||||||||| ||||||||||||||||| ||||    
T  22774008 ataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 16457268 - 16457129
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg--- 174  Q
    ||||||| | ||||||||||||| | ||||| ||| ||  ||| || ||||||||||||||||||||||||||  ||||||||||||| ||||||||       
T  16457268 ttaggtggtgatgtgttttggtgcgattatcctcaaggatttt-ttaggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcc 16457170  T
Q  175 --------cgtcttgcggggatgacgtttaataatatttgc 207  Q
            |||||||| ||||||||||||||||||||||||    
T  16457169 ataccttacgtcttgcagggatgacgtttaataatatttgc 16457129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 41893188 - 41893109
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtatttt 168  Q
    |||||||||||||| |||||| || |||  ||| || |||||||||||||||||||||||||||  |||||||||||||||    
T  41893188 atgtgttttggtggatttatcctc-gggttttttttaggtggttatggtgtaccgtctatatgcgacaccatttgtatttt 41893109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 9659496 - 9659534
Alignment:
Q  174 gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  9659496 gcgtcttgcggggatgacgtttaataatatttgccgatt 9659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 34866347 - 34866309
Alignment:
Q  174 gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  34866347 gcgtcttgcggggatgacgtttaataatatttgccgatt 34866309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 10837988 - 10837947
Alignment:
Q  121 gtttggtggttatggtgtaccgtctatatgcagcaccatttg 162  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  10837988 gtttggtggttatggtgtaccgtctatatgcggcacgatttg 10837947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 35821590 - 35821638
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||||||||| ||| |||||||||  |||||||    
T  35821590 gtggttatggtgtaccgtctatatgcggcatcatttgtatcatgtttcg 35821638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 40023423 - 40023218
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgttt-gtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggc 117  Q
    |||||||| ||||| ||| |||  |||||||| ||||| |||||| ||||||||||  ||||||||| | |||||||||| |||||||||||||||||||    
T  40023423 gacgatggatggttgtggataccgtgtttacagtgttttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttgatgggtttatcttcaggggc 40023324  T
Q  118 tttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc-----------gcgtcttgcggggatgacgtttaataatatttg 206  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||           ||||||||||||||||| |||||||||||||||    
T  40023323 tttgtttggtggttatggtgtaccgtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgtttaataatatttg 40023224  T
Q  207 ctgatt 212  Q
     |||||    
T  40023223 ttgatt 40023218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 23328201 - 23328046
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    |||||||||||||| ||| || | || ||||| ||||||||||| |||||  |||| ||||||||| | || | |||| ||||||||||| ||| |||||    
T  23328201 gacgatgggtggttgtggatattgtgcttacagtgtttgtttctgttaagaggtccgtcttaggtggtgatatattttcgtgggtttatcctcaagggct 23328102  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  23328101 ttgtttggtggttatggtgtaccgtatatatgcggcaccatttatatcttgtttcg 23328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 50305392 - 50305223
Alignment:
Q  54 tttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcag 153  Q
    ||||||||| ||||||||| | ||||||||| |   ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||      
T  50305392 tttgtttctgttaaggtgttcgtcttaggtggtgtagtgttttggtgggtttatcttcaggggctttatttgatggttatggtgtaccgtctatatgcga 50305293  T
Q  154 caccatttgtattttgtt-----------tcgcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||| |||||           | |||||||||||| ||| ||||||||||||||||||||||    
T  50305292 caccatttgtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatatttgctgatt 50305223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 2392287 - 2392159
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc-----------gcg 176  Q
    |||||||||||||||||||| ||||||||  || || ||||||||||||||||||||||||||| ||||||||||||| |||||||           |||    
T  2392287 atgtgttttggtgggtttattttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcg 2392188  T
Q  177 tcttgcggggatgacgtttaataatattt 205  Q
    |||||||||||||||||||||||||||||    
T  2392187 tcttgcggggatgacgtttaataatattt 2392159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 2394050 - 2393922
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc-----------gcg 176  Q
    |||||||||||||||||||| ||||||||  || || ||||||||||||||||||||||||||| ||||||||||||| |||||||           |||    
T  2394050 atgtgttttggtgggtttattttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcg 2393951  T
Q  177 tcttgcggggatgacgtttaataatattt 205  Q
    |||||||||||||||||||||||||||||    
T  2393950 tcttgcggggatgacgtttaataatattt 2393922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 45164109 - 45164234
Alignment:
Q  43 tgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccg 142  Q
    ||||||||||| ||||||||||   || ||| || ||||||| | |||||||||||||||||||||| |||||  ||| || ||||||||||||||||||    
T  45164109 tgtttacaatgcttgtttcttt---ggagtctattttaggtggtgatgtgttttggtgggtttatctccagggtgttt-ttaggtggttatggtgtaccg 45164204  T
Q  143 tctatatgcagcaccatttgtattttgttt 172  Q
    ||||||||| ||||||||||||| ||||||    
T  45164205 tctatatgcggcaccatttgtatcttgttt 45164234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 19176793 - 19176889
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| |||||||||||||||||||| ||||||||||  || || ||| ||||||||||||||||||||||| |||||||||||||  |||||||    
T  19176793 ttaggtggttatgtgttttggtgggtttgtcttcaggggtatttttaggtcgttatggtgtaccgtctatatgcggcaccatttgtatcatgtttcg 19176889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 21343631 - 21343730
Alignment:
Q  74 catcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc 173  Q
    ||||||||||| | ||||||||||||||||| ||||||| ||||  |||| |||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  21343631 catcttaggtggtgatgtgttttggtgggtt-atcttcacgggccatgttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttc 21343729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 31483177 - 31483261
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    ||||||||||||| |||||||| ||||||  || || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31483177 atgtgttttggtgagtttatctccaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgttt 31483261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 30352223 - 30352137
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||||| |||||||||||||  || || ||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  30352223 atgtgttttggtgggcttatcttcaggggtgtttttaggtggttatggtgtaccttctatatgcggcaccatttgtatcttgtttcg 30352137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 17551244 - 17551340
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||| | ||||| ||  || || |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  17551244 ttaggtggtgatgtgttttggtgggttttttttcagaggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtattttgtttcg 17551340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 34475552 - 34475407
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | ||||||||||||| |||||||| ||||||  || || |||||||||||| |||||||||||||  ||||||||||||| |||||||        
T  34475552 ttaggtggtgatgtgttttggtgagtttatctccaggggtgttcttaggtggttatggtataccgtctatatggggcaccatttgtatcttgtttcgttc 34475453  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           |||||||||||||||||||||||||||||| ||| ||||    
T  34475452 ataccctgcgtcttgcggggatgacgtttaataatatgtgccgatt 34475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 47235985 - 47236130
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | |||| ||||||||||||||||| ||||||  || || | |||||||||| |||||||||||||| ||||||||||||| |||||||        
T  47235985 ttaggtggtgatgtattttggtgggtttatctccaggggtgtttttagatggttatggtataccgtctatatgcggcaccatttgtatcttgtttcgtcc 47236084  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           ||||||||| |||||| ||||||||||||||||||||||    
T  47236085 ataccttgcgtcttgcagggatggcgtttaataatatttgctgatt 47236130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 9583837 - 9583751
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||| |||| |||  || || ||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  9583837 atgtgttttggtgggtttattttcaagggtatttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcg 9583751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 43012629 - 43012760
Alignment:
Q  43 tgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccg 142  Q
    ||||||||||| |||||| | | |||| |||  | |||| || | |||| ||||||||||||| |||||||| |  || || ||||||||||||||| ||    
T  43012629 tgtttacaatgcttgtttttgtgaaggagtctgttttagatggtgatgtcttttggtgggtttttcttcaggagtgtttttaggtggttatggtgtatcg 43012728  T
Q  143 tctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||| ||||||||||||| ||||||||    
T  43012729 tctatatgcggcaccatttgtatattgtttcg 43012760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 45399062 - 45399168
Alignment:
Q  54 tttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcag 153  Q
    ||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||              ||||||||||||||||||||||||||||| |    
T  45399062 tttgtttctgttaaggtgtccgtcttaggtggtgatgtgttttggtgggtttatc--------------ttggtggttatggtgtaccgtctatatgcgg 45399147  T
Q  154 caccatttgtattttgtttcg 174  Q
    |||| ||||||| ||||||||    
T  45399148 caccgtttgtatcttgtttcg 45399168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 25506814 - 25506770
Alignment:
Q  128 ggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  25506814 ggttatggtgtaccgtctatatgcggcaccatttgtatattgttt 25506770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 50559959 - 50560027
Alignment:
Q  106 atcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| ||| ||| | ||||||| ||||||||    
T  50559959 atcttcatgggttttgtttggtggttatggtgcaccgtctatgtgcggcatcttttgtatcttgtttcg 50560027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 4463831 - 4463783
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||| ||||||||||||| ||||||||||| | ||||||||    
T  4463831 gtggttatggtgcaccgtctatatgcggcaccatttgtgtgttgtttcg 4463783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 53248187 - 53248281
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    ||||||| | ||||||||| ||||| ||||||||||||   || || | ||||||||||||||   ||||||||  |||||||||||| ||||||    
T  53248187 ttaggtggtgatgtgtttttgtggggttatcttcagggttgtttttagatggttatggtgtacaacctatatgcgacaccatttgtatcttgttt 53248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 45399177 - 45399217
Alignment:
Q  172 tcgcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    ||||||||| ||| |||| ||||||||||||||||||||||    
T  45399177 tcgcgtctttcggagatgtcgtttaataatatttgctgatt 45399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 53248298 - 53248326
Alignment:
Q  178 cttgcggggatgacgtttaataatatttg 206  Q
    |||||||||||||||||||||||||||||    
T  53248298 cttgcggggatgacgtttaataatatttg 53248326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 34391445 - 34391614
Alignment:
Q  54 tttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcag 153  Q
    ||||||||| ||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  34391445 tttgtttctattaaggtgttcgtcttaggtggtgatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtatcgtctatatgcgg 34391544  T
Q  154 caccatttgtattttgtttc-----------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    ||  |||||||| |||||||           ||||| |||||||||||||||||||||||||||||||||    
T  34391545 cattatttgtatcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatatttgctgatt 34391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 6585112 - 6585318
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgttt-gtttcttttaaggtgtccatcttaggtgatt-atgtgttttggtgggtttatcttcagggg 116  Q
    ||||||| |||||| ||| |||| ||||| || ||||| |||||| ||||||||||| ||||||| |  | |||||||| ||||| ||||||||||||||    
T  6585112 gacgatgagtggttgtggatactgtgttttcagtgttttgtttctgttaaggtgtccgtcttaggggggtgatgtgtttaggtggctttatcttcagggg 6585211  T
Q  117 ctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc-----------gcgtcttgcggggatgacgtttaataatattt 205  Q
     |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||           || ||||||||||||| |||||||||||||||    
T  6585212 ttttgtttggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataatattt 6585311  T
Q  206 gctgatt 212  Q
    |||||||    
T  6585312 gctgatt 6585318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 31971929 - 31971784
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| |||||||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||| ||||||||||||| |||||||        
T  31971929 ttaggtggttatgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 31971830  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           |||||||||||||||| ||||||||||||||||| ||||    
T  31971829 ataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 31971784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 5860077 - 5859932
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | ||||||||||||||| ||||||| |||||  || || ||||||||||||||||||||||||||| ||||||||||||| |||||||        
T  5860077 ttaggtggtgatgtgttttggtgggattatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 5859978  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           |||||||||||||||||||||||||||||||||| ||||    
T  5859977 atatcatgcgtcttgcggggatgacgtttaataatatttgccgatt 5859932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 40726299 - 40726203
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||| ||||||  || || |||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  40726299 ttaggtggtaatgtgttttggtgggtttatctccaggggtgtttttaggtggttatggtgtaccgtctatatgtagcatcatttgtattttgtttcg 40726203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 47325678 - 47325583
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||||||| |  ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47325678 ttaggtggtgatgtgttttggtgggtttatcttcagagtgttt-ttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcg 47325583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 42454518 - 42454383
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc-----------gcg 176  Q
    ||||||||||||||||||||||||| ||  ||| || |||||||||||||||| |||||||||| ||||||||||||  |||||||           |||    
T  42454518 atgtgttttggtgggtttatcttcaaggatttttttaggtggttatggtgtactgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcg 42454419  T
Q  177 tcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||||| |||||||||||||||||||||    
T  42454418 tcttgcggggatgatgtttaataatatttgctgatt 42454383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 38306547 - 38306643
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||| |||||||||| |||||  || || ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  38306547 ttaggtggtgatgtgttttggttggtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 38306643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 48161808 - 48161690
Alignment:
Q  104 ttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtt----------tcgcgtcttgcggggatgacgt 193  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||          | | ||||||| ||||||||||    
T  48161808 ttatcttcaggggctttgttaggtggttatggtgtgccgtctatatgcggcactatttgtattttgttcgtccatatcttgtgtcttgcagggatgacgt 48161709  T
Q  194 ttaataatatttgctgatt 212  Q
    |||||||||||||||||||    
T  48161708 ttaataatatttgctgatt 48161690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 41089537 - 41089442
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||| |||||||||||||| |||||||||| |||  || || ||||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  41089537 ttaggtgatgatgtgttttggtggatttatcttcatgggtgtttttaggtggttatggtgtaccgtctatatgcggcacca-ttgtatcttgtttcg 41089442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 44353358 - 44353262
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||| || |||  || || ||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  44353358 ttaggtggtgatgtgttttggtgggtttatctccatgggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcg 44353262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 10244467 - 10244563
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | ||||||||| ||||  |||||||||||||  || || |||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  10244467 ttaggtggtgatgtgttttcgtggacttatcttcaggggtgtttttaggtggttatggtgtactgtctatatgcggcaccatttgtatcttgtttcg 10244563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 25161096 - 25161191
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||| |||||  ||| || ||||||||||||||||||||||||| | |||||||||| || ||||||||    
T  25161096 ttaggtggtgatgtgttttggtgggtttatctccagggtgttt-ttaggtggttatggtgtaccgtctatatacggcaccatttgcatcttgtttcg 25161191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 33434625 - 33434529
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||| | ||||||  || || ||||||||||||||||||||||||| ||| ||||||||||| ||| ||||    
T  33434625 ttaggtggtgatgtgttttggtgggtttatttccaggggtgtttttaggtggttatggtgtaccgtctatatacagaaccatttgtatcttgcttcg 33434529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 3867412 - 3867498
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||| |||||||||||||||  || ||  || ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  3867412 atgtgttttggtgagtttatcttcaggggtgtttttatgttgttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcg 3867498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 35745640 - 35745556
Alignment:
Q  52 tgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgt 138  Q
    ||||||||||| ||||||||||  ||||||||| | ||||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  35745640 tgtttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttggtggg-ttatcttcaggggc-ttgtatggtggttatggtgt 35745556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 3419180 - 3419054
Alignment:
Q  89 tgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc-----------gcgt 177  Q
    |||||||||||| ||||||||||||| |  || || ||||||||||||||||||||  ||||| ||| | ||||||| |||||||           ||||    
T  3419180 tgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtc--tatgcggcaacgtttgtatcttgtttcgtccataccttgcgt 3419083  T
Q  178 cttgcggggatgacgtttaataatatttg 206  Q
    |||||||||||||||||||||||||||||    
T  3419082 cttgcggggatgacgtttaataatatttg 3419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 3419439 - 3419381
Alignment:
Q  89 tgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctat 147  Q
    |||||||||||| ||||||||||||| |  || || |||||||||||||||||||||||    
T  3419439 tgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtctat 3419381  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 37795283 - 37795379
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | || |||||| ||||||||||||||| |||  || || ||||||||||||||||||| ||   ||  |||||||||||| ||||||||    
T  37795283 ttaggtggtgatatgtttttgtgggtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcg 37795379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 37795611 - 37795707
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | || |||||| ||||||||||||||| |||  || || ||||||||||||||||||| ||   ||  |||||||||||| ||||||||    
T  37795611 ttaggtggtgatatgtttttgtgggtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcg 37795707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 40726178 - 40726140
Alignment:
Q  174 gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  40726178 gcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 43482239 - 43482288
Alignment:
Q  125 ggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| ||||||||||||| |||||||||| |||||||| || |||||    
T  43482239 ggtggttgtggtgtaccgtctgtatgcagcactatttgtatcttatttcg 43482288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 35329304 - 35329390
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||||||||||||||| |||  || || ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35329304 atgtgttttggtgggtttatcttcatgggtatttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcg 35329390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 2826012 - 2826213
Alignment:
Q  19 gacgatgggtggttatggttactatgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggct 118  Q
    |||||||||  ||| ||| ||||  |||||||  |||||||||| |||||||||   ||||||||||| ||||||||||| ||  ||||||||||||  |    
T  2826012 gacgatgggacgttgtggatactgcgtttacagggtttgtttctgttaaggtgtttgtcttaggtgatgatgtgttttggagg--ttatcttcagggt-t 2826108  T
Q  119 ttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtt-----------tcgcgtcttgcggggatgacgtttaataatatttgc 207  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||||| |||||           | ||||||||| | ||||||||||||||||||||||    
T  2826109 ttgtttgggggttatggtgtaccgtatatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataatatttgc 2826208  T
Q  208 tgatt 212  Q
    |||||    
T  2826209 tgatt 2826213  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 27555725 - 27555629
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||||||||||  || || ||||||||||||||||| ||||||||| |||| |||||||| ||||||||    
T  27555725 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcacaatttgtatcttgtttcg 27555629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 30964724 - 30964820
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | |||||||||||||||||||||| |||| |  || || |||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  30964724 ttaggtggtgatgtgttttggtgggtttatctccaggagtgtttttaggtggttatggtgtaccgtctatatgcaacatcatttgtatcttgtttcg 30964820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 20464876 - 20464971
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc 173  Q
    ||||||| | |||| | ||||||||||||||||||||||  || || ||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  20464876 ttaggtggtgatgtatgttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatacggcaccatttgtatcttgtttc 20464971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 31050488 - 31050359
Alignment:
Q  43 tgtttacaatgtttgtttcttttaaggtgtccatcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccg 142  Q
    |||||||| |||||| |||| || |||||| | ||||||||| | |||||||||| || ||| ||||||||| |||| || |||||||||||||||||||    
T  31050488 tgtttacagtgtttgcttctgttgaggtgttcgtcttaggtggtgatgtgttttgatgagtt-atcttcaggtgctt-gtatggtggttatggtgtaccg 31050391  T
Q  143 tctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||  || ||||||||| ||||||||    
T  31050390 tctatatgcgacatcatttgtatcttgtttcg 31050359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 35341121 - 35341051
Alignment:
Q  104 ttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||  || |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  35341121 ttatcttcaggggctttgtccgggggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcg 35341051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 52868881 - 52868819
Alignment:
Q  103 tttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtat 165  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  52868881 tttatattcgggggctttgtttggtggttatggtgtaccgtctatacgcgacaccatttgtat 52868819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 8255314 - 8255406
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgt 170  Q
    ||||||| | ||||||||| ||| ||||||||||||| |  || || |||||||||| |||||||||||||||| ||| ||||||||| ||||    
T  8255314 ttaggtggtgatgtgtttttgtgagtttatcttcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgt 8255406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 8268732 - 8268824
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgt 170  Q
    ||||||| | ||||||||| ||| ||||||||||||| |  || || |||||||||| |||||||||||||||| ||| ||||||||| ||||    
T  8268732 ttaggtggtgatgtgtttttgtgagtttatcttcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgt 8268824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 8705887 - 8705847
Alignment:
Q  125 ggtggttatggtgtaccgtctatatgcagcaccatttgtat 165  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8705887 ggtggttatggtgtaccgtctatatgcagcaccatttgtat 8705847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 11281515 - 11281423
Alignment:
Q  82 gtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||| ||||||||| ||||| |||||||||| ||  || || |||||||||||| |||||||||||| ||||||||||| |||  |||||||    
T  11281515 gtgatgatgtgttttagtggggttatcttcagaggtgtttttaggtggttatggtataccgtctatatacagcaccatttatatcatgtttcg 11281423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 46698525 - 46698477
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  46698525 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 46698477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 4305992 - 4306075
Alignment:
Q  76 tcttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccattt 161  Q
    ||||||||| | ||||||||||||||| ||||| ||  ||  ||| || ||||||||||||||||||||||||||| |||||||||    
T  4305992 tcttaggtggtgatgtgttttggtgggattatcctc--ggatttttttaggtggttatggtgtaccgtctatatgcggcaccattt 4306075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 7703021 - 7703118
Alignment:
Q  125 ggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtt----------tcgcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||          | | |||||||||||||||||||||||||||||||| ||||    
T  7703021 ggtggttatggtgtaccgtctatatgcggcaccatttgtatctttttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccgatt 7703118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 36689589 - 36689503
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||||||||| |||||||||||||||  || ||  |||||||| |||||||||||||||||   ||||||||||| || |||||    
T  36689589 atgtgttttggtgagtttatcttcaggggtgtttttaagtggttatagtgtaccgtctatatgcgataccatttgtatcttatttcg 36689503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 49528421 - 49528469
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  49528421 gtggttttggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 49528469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 12704936 - 12704970
Alignment:
Q  229 acaactatttaaagtgttcaagaaatgttccaaca 263  Q
    |||||||||||||||||||||||||||||||||||    
T  12704936 acaactatttaaagtgttcaagaaatgttccaaca 12704970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 9750116 - 9750192
Alignment:
Q  140 ccgtctatatgcagcaccatttgtattttgtttcg----------cgtcttgcggggatgacgtttaataatatttg 206  Q
    |||||||||||| ||||||||||||| ||||||||          ||||||||||||||||||||||||||||||||    
T  9750116 ccgtctatatgcggcaccatttgtatcttgtttcgtccaaacctgcgtcttgcggggatgacgtttaataatatttg 9750192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 30167349 - 30167288
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatat 149  Q
    |||||||||||||||||||||||||| ||  || || | ||||||| |||||||||||||||    
T  30167349 atgtgttttggtgggtttatcttcagtggtatttttagatggttatagtgtaccgtctatat 30167288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 29087765 - 29087896
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg--c 175  Q
    ||||||| | ||||||||||||||||||||||||||||   || || |||||||||| |||||||||||||||| ||||||||||||| ||||||||  |    
T  29087765 ttaggtgctgatgtgttttggtgggtttatcttcagggttgtttttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 29087864  T
Q  176 gt--cttgcggggatgacgtttaataatattt 205  Q
     |  ||||| ||||||||||||||||||||||    
T  29087865 ataccttgcagggatgacgtttaataatattt 29087896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 18593529 - 18593674
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | ||||||||||| |||||||||||||||||  || || ||||||||||||||||||||||||||| ||||||| | ||| |||||||        
T  18593529 ttaggtggtgatgtgttttggcgggtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatatttatcttgtttcgtcc 18593628  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           || ||||||||||||||||||||||||||||||| ||||    
T  18593629 ataccttgcatcttgcggggatgacgtttaataatatttgccgatt 18593674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 34378386 - 34378473
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtat 165  Q
    ||||||| | ||||||||| |||||||||||||||||||  || || | ||||||||||||||||||||||||| |||||||||||||    
T  34378386 ttaggtggtgatgtgtttttgtgggtttatcttcaggggtgtttttagatggttatggtgtaccgtctatatgcggcaccatttgtat 34378473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 41250939 - 41250854
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcgcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
    |||||||||||||||||||||||||| ||||||||| ||| |||||| |||| ||||| |||||| |||||||||||||||| ||||    
T  41250939 gtggttatggtgtaccgtctatatgcggcaccatttatatcttgttt-gcgttttgcgaggatgatgtttaataatatttgccgatt 41250854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 7161798 - 7161712
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||| ||||||||  || || |||| ||||||||||||||||||||||  ||| |||||||| || |||||    
T  7161798 atgtgttttggtgggtttatattcaggggtgtttttaggtgattatggtgtaccgtctatatgctacactatttgtatcttatttcg 7161712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 698664 - 698741
Alignment:
Q  88 atgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtat 165  Q
    ||||| |||||| |||||||||||| |||  || || ||||||||| ||||||||||||||||| |||||||||||||    
T  698664 atgtggtttggtaggtttatcttcaagggtgtttttaggtggttatagtgtaccgtctatatgcggcaccatttgtat 698741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 7452922 - 7452962
Alignment:
Q  125 ggtggttatggtgtaccgtctatatgcagcaccatttgtat 165  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  7452922 ggtggttatggtgtaccgtctatatgcggcaccatttgtat 7452962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 5656875 - 5656791
Alignment:
Q  90 gtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||| |||||||| ||| |  || || |||||||||  |||||||||||||||| ||| ||||||||| || |||||    
T  5656875 gtgttttggtggatttatcttaaggtgtgtttttaggtggttatcatgtaccgtctatatgcggcatcatttgtatcttatttcg 5656791  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 18255192 - 18255148
Alignment:
Q  130 ttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||| |||||||||||||||| |||| |||||||| ||||||||    
T  18255192 ttatgatgtaccgtctatatgcggcactatttgtatcttgtttcg 18255148  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 18313393 - 18313353
Alignment:
Q  133 tggtgtaccgtctatatgcagcaccatttgtattttgtttc 173  Q
    ||||||||||||||||||| |||||||||| || |||||||    
T  18313393 tggtgtaccgtctatatgcggcaccatttgcatcttgtttc 18313353  T

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Target: scaffold0434 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 2467 - 2371
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | ||||| ||||||||||||||||||| |||  || || ||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  2467 ttaggtggtgatgtggtttggtgggtttatcttcaagggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatctgtatcttgtttcg 2371  T

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Target: scaffold0085 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 48622 - 48716
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgttt 172  Q
    ||||||||| |||||||||||| || ||||||| | |||  || || ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  48622 ttaggtgatgatgtgttttggtaggattatctttaagggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgttt 48716  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 3254244 - 3254389
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc---- 173  Q
    ||||||| | |||| ||||||||||||||| ||||||||  || || ||||| ||||||||||  ||||||| | ||||||||||||| |||||||        
T  3254244 ttaggtggtgatgtattttggtgggtttattttcaggggtgtttttaggtggctatggtgtactatctatatacggcaccatttgtatcttgtttcgtcc 3254343  T
Q  174 -------gcgtcttgcggggatgacgtttaataatatttgctgatt 212  Q
           |||||||||||||||||||||||||||||||||| ||||    
T  3254344 ataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 15944286 - 15944373
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtat 165  Q
    ||||||| | |||||||||||||||||||| ||||||||  || || |||| ||||||||||||||||||||||  ||||||||||||    
T  15944286 ttaggtggtgatgtgttttggtgggtttatattcaggggtatttttaggtgtttatggtgtaccgtctatatgcgacaccatttgtat 15944373  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 10542134 - 10542214
Alignment:
Q  94 tttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||| ||||||||||||||||||  || || ||||||||||||||| ||||||||||| ||||| ||||||| ||||||||    
T  10542134 tttgatgggtttatcttcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccttttgtatcttgtttcg 10542214  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 33697843 - 33697795
Alignment:
Q  126 gtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  33697843 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 33697795  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 3117781 - 3117877
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttcg 174  Q
    ||||||| | ||||| |||||| ||||||||||  | ||  || || ||||||||||||||| ||||||||||| ||||||||||||| || |||||    
T  3117781 ttaggtggtgatgtggtttggtaggtttatctttggaggtgtttttaggtggttatggtgtagcgtctatatgctgcaccatttgtatcttatttcg 3117877  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 24118323 - 24118291
Alignment:
Q  235 atttaaagtgttcaagaaatgttccaacacgtt 267  Q
    |||| ||||||||||||||||||||||||||||    
T  24118323 attttaagtgttcaagaaatgttccaacacgtt 24118291  T

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Target: scaffold0172 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 19205 - 19345
Alignment:
Q  78 ttaggtgattatgtgttttggtgggtttatcttcaggggctttgtttggtgg-ttatggtgtaccgtctatatgcagcaccatttgtattttgtttc--- 173  Q
    ||||||| | |||| |||||||||||||||||||||    ||| || ||||| |||||||||||||||||||||| ||||||||||||| |||||||       
T  19205 ttaggtggtgatgtattttggtgggtttatcttcagatttttt-ttaggtgggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtc 19303  T
Q  174 --------gcgtcttgcggggatgacgtttaataatatttgc 207  Q
            |||||||||| |||||||||||||||||||||||    
T  19304 cataccatgcgtcttgcgaggatgacgtttaataatatttgc 19345  T

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Target: scaffold0343 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 5991 - 6131
Alignment:
Q  78 ttaggtgattatgtgttttggtggg-tttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcagcaccatttgtattttgtttc--- 173  Q
    ||||||| | ||||||||| ||||| ||||||||||| ||  || || |||||||||| |||| ||||||||| | ||||||||||||| |||| ||       
T  5991 ttaggtggtgatgtgtttttgtggggtttatcttcagaggtgtttttaggtggttatgatgtaacgtctatatacggcaccatttgtatcttgtctcgtt 6090  T
Q  174 --------gcgtcttgcggggatgacgtttaataatatttg 206  Q
            |||||||||||||||||||||||||||||||||    
T  6091 catatcttgcgtcttgcggggatgacgtttaataatatttg 6131  T

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