View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12590_low_9 (Length: 508)

Name: NF12590_low_9
Description: NF12590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12590_low_9
NF12590_low_9
[»] chr5 (2 HSPs)
chr5 (305-497)||(4284361-4284553)
chr5 (19-192)||(4284075-4284248)
[»] chr7 (2 HSPs)
chr7 (24-101)||(23428538-23428615)
chr7 (309-365)||(23429422-23429478)
[»] chr2 (2 HSPs)
chr2 (54-108)||(25978334-25978388)
chr2 (57-110)||(4039751-4039804)
[»] chr4 (2 HSPs)
chr4 (151-192)||(8682280-8682321)
chr4 (153-192)||(6348737-6348776)
[»] chr6 (1 HSPs)
chr6 (54-110)||(16999818-16999874)
[»] chr8 (1 HSPs)
chr8 (54-110)||(4183535-4183591)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 305 - 497
Target Start/End: Original strand, 4284361 - 4284553
Alignment:
Q  305 ccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattgatgaataataatggatgcaaattgaagaagttcgaattt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4284361 ccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattgatgaataataatggatgcaaattgaagaagttcgaattt 4284460  T
Q  405 gatttgattgttactgagaaaaaatttaggtttggaactgcaaattctcgaaggaatgaagcattccaagtttcaactgtaaaaccagtgaac 497  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4284461 gatttgattattactgagaaaaaatttaggttttgaactgcaaattctcgaaggaatgaagcattccaagtttcaactgcaaaaccagtgaac 4284553  T

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Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 4284075 - 4284248
Alignment:
Q  19 agggagtttgtttgttaaaagatcgacgatgaggattcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaacagggaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4284075 agggagtttgtttgttaaaagatcgacgatgaggattcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaacggggaga 4284174  T
Q  119 tcggcagtgatttccgtcgggatttggtgaagttgggggtttagggttttgagatggaaattgattttggattt 192  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4284175 tcggcagtgatttctgtcgggatttggtgaagttgggggtttagggttttgagatggaaattgattttggattt 4284248  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 23428538 - 23428615
Alignment:
Q  24 gtttgtttgttaaaagatcgacgatgaggattcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgac 101  Q
    |||| |||||||| ||||||||||||| || | ||||| ||||||||||||||||| ||||||| |||| ||||||||    
T  23428538 gtttatttgttaacagatcgacgatgaagacttgaggaatgatgaaacaaacgtggtcggaggagtagaaagagtgac 23428615  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 23429422 - 23429478
Alignment:
Q  309 cattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattg 365  Q
    ||||||||||||||||||| |  |||||||||| |  ||||||||||||||||||||    
T  23429422 cattggtgtcttctagaagttaagtgattatgtttgtgtggaattgaagaaccattg 23429478  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 25978388 - 25978334
Alignment:
Q  54 ttcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggtt 108  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| || |||||||    
T  25978388 ttcgaggagtgatgaaacaaatgtggccggaggaatatagagagcgatggtggtt 25978334  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 4039751 - 4039804
Alignment:
Q  57 gaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaa 110  Q
    |||||||||| ||||||| ||||||||||||||| |||||| || |||||||||    
T  4039751 gaggagtgatcaaacaaatgtggccggaggaataaagagagcgatggtggttaa 4039804  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 8682280 - 8682321
Alignment:
Q  151 ttgggggtttagggttttgagatggaaattgattttggattt 192  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  8682280 ttggtggtttagggttttgagatggaaattgattttggattt 8682321  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 6348776 - 6348737
Alignment:
Q  153 gggggtttagggttttgagatggaaattgattttggattt 192  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  6348776 gggggtttagggttttgagatgcaaattgattttgtattt 6348737  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 16999818 - 16999874
Alignment:
Q  54 ttcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaa 110  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||| || |||||||||    
T  16999818 ttcgaggagtgataaaacaaatgtggccggaggaatatagagagcgatggtggttaa 16999874  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 4183535 - 4183591
Alignment:
Q  54 ttcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaa 110  Q
    ||||||||||||| ||||||  ||||||||||||||| |||||| || |||||||||    
T  4183535 ttcgaggagtgataaaacaattgtggccggaggaatatagagagcgatggtggttaa 4183591  T

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