View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12591_high_3 (Length: 494)
Name: NF12591_high_3
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 43985579 - 43985101
Alignment:
| Q |
1 |
aatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaacc |
100 |
Q |
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| T |
43985579 |
aatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaacc |
43985480 |
T |
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| Q |
101 |
tgcgggaaaaagaatgcagtggttgccatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgttt |
200 |
Q |
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| T |
43985479 |
tgcggaaaaaagaatgcagtggttgcgatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgttt |
43985380 |
T |
|
| Q |
201 |
ctattttgaataccttgtgcaacaaggaagagcttgttactgaaactttggctgttcttgcggcacttgctgagaattttgatggagctaatgctgtttt |
300 |
Q |
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| T |
43985379 |
ctattttgaataccttgtgcaacaaggaagagcttgttactgaaactctggctgttcttgcggcacttgctgagaattttgatggagctaatgctgtttt |
43985280 |
T |
|
| Q |
301 |
ggaagcttctgcattgccgttgattgctgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtgtt |
400 |
Q |
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| T |
43985279 |
ggaagcttctgcattgccgttgattactgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtgtt |
43985180 |
T |
|
| Q |
401 |
aatggtggtgtggatgttgctggtgttcttgctaaggatgttacacttatgcctttgctctattcgcttcttactgatg |
479 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43985179 |
aatggtggtgttgatgttgctggtgttcttgctaaggatgttacacttatgcctttgctctattcgcttcttactgatg |
43985101 |
T |
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