View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12591_low_1 (Length: 605)
Name: NF12591_low_1
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 20 - 598
Target Start/End: Complemental strand, 8380543 - 8379975
Alignment:
| Q |
20 |
ccctcgagatcaaacttgcctaaactcttattcatcaaaataaaaaacaaagacaacttcacacaaaccttcaactttttcttactttattttcaga--g |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |
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| T |
8380543 |
ccctcgagatcaaacttgcctaaactgttattcatcaaaataaa------------cttcacacaaaccttcaactttttcttactttattttcataaag |
8380456 |
T |
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| Q |
118 |
tttcatttccaaccaacaacttcttaattcataaaactcatacttcaaagttttcaagccaacatcacagcacaattgtgaatataagagttaagatttc |
217 |
Q |
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||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8380455 |
tttcatttccaaccaacaactacttaatccataaaactcattcttcaaagttttcaagccaacatcacagcacaattgtgaatataagagttaagatttc |
8380356 |
T |
|
| Q |
218 |
cactaccacacacaattttcttccactccaaaacctccaaatcaggatgaggaaaacacttataaatcttcatcactgttttacaaataacaagcaattc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8380355 |
cactaccacacacaattttcttccactccaaaacctccaaatcaggatgaggaaaacacttataaatcttcatcgctgttttacaaataacaagcaattc |
8380256 |
T |
|
| Q |
318 |
atttcccaaagatttgaatgccacaccataaccaacttggttatcagctctaacaggaacaaaccctaacttcttccacaagttactagttttcatataa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8380255 |
atttcccaaagatttgaatgccacaccataaccaacttggttatcagctctaacaggaacaaaccctaacttcttccacaagttactatctttcatataa |
8380156 |
T |
|
| Q |
418 |
acctttacctcgtttgttgaagcgtcaagtgtgtacaattcattgttaacaacagctataagaggtggtaatcttgaacttgcaagaacaatatccttca |
517 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
8380155 |
acctttacctcgtttgttgaagcatcaagtgtgtacaattcattgttaacaacagctataagtggtggtaatcttgaacttgaaagaacaatatccttca |
8380056 |
T |
|
| Q |
518 |
acatgttaggaatcaaattccacttgttggtcttttcgtcgaagaattcaccacatgttagatcgtcattgttttcatctc |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8380055 |
acatgttaggaatcaaattccacttgttggtcttttcgtcgaagaattcaccacatgttagatcgtcattattttcatctc |
8379975 |
T |
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