View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12591_low_12 (Length: 299)
Name: NF12591_low_12
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 32854167 - 32853869
Alignment:
| Q |
1 |
aaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttattgaagaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32854167 |
aaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttattgaagaaac |
32854068 |
T |
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| Q |
101 |
aaaggacctcacaaaactctcacaatatgaattgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattggagaatgtt |
200 |
Q |
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| T |
32854067 |
aaaggacctcacaaaactctcacaatatgaactgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattggagaatgtt |
32853968 |
T |
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| Q |
201 |
tttcaagcaaagatgaatatccggagttccaactcgcggcaagaaggaagtggggactcatttcgtggacatccctccaacagaggtcatggaaggcat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32853967 |
tttcaagcaaagatgaatatccggagttccaactcgcgacaagaaggaagtggggactcatttcgtggacatccttccaacagaggtcatggaaggcat |
32853869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 37177302 - 37177004
Alignment:
| Q |
1 |
aaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttattgaagaaac |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177302 |
aaagttgtggagaacaagttccagaaaagaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttattgaagaaac |
37177203 |
T |
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| Q |
101 |
aaaggacctcacaaaactctcacaatatgaattgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattggagaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177202 |
aaaggacctcacaaaactctcacaatataaattgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattggagaatgtt |
37177103 |
T |
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| Q |
201 |
tttcaagcaaagatgaatatccggagttccaactcgcggcaagaaggaagtggggactcatttcgtggacatccctccaacagaggtcatggaaggcat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
37177102 |
tttcaagcaaagatgaatatccggagttccaactcgcgacaagaaggaagtggggactcatttcgtggacatccttccaacataggtcatggaaggcat |
37177004 |
T |
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