View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12591_low_15 (Length: 271)
Name: NF12591_low_15
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 9665481 - 9665234
Alignment:
| Q |
9 |
agcagagatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgt |
108 |
Q |
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| T |
9665481 |
agcaaagatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccatcccaatgatctgcttcgtctgtggatcctgt |
9665382 |
T |
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| Q |
109 |
acctgaacaccagatgttgaaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgt |
208 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9665381 |
acctgaacaccagatgttgaaaaataaacattcagtccttgttcacacaattgaccaacaaaaataagattaagtgtcaagttaggaatgtaatatgtgt |
9665282 |
T |
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| Q |
209 |
taggtagggtgagatttgaggtggatacatgaccggtataagtgatgt |
256 |
Q |
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| T |
9665281 |
caggcagggtgagatttgaggtggatacatgaccggtatgagtgatgt |
9665234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 11351055 - 11350953
Alignment:
| Q |
9 |
agcagagatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| | |
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| T |
11351055 |
agcagagatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccgtcccaatgatctgcttcgtctgtggatcctat |
11350956 |
T |
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| Q |
109 |
acc |
111 |
Q |
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||| |
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| T |
11350955 |
acc |
11350953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 12617584 - 12617358
Alignment:
| Q |
28 |
ggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacctgaacaccagatgttg |
127 |
Q |
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||||| || |||||||| ||||||||||| |||||||||| ||| |||||||||| || ||||| ||| ||| |||| || ||||| || | | |
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| T |
12617584 |
ggaagatgaagagattgaagctcaaataatagacccaccctgcgacatgtcccaatgatatgtttcgtttgtagattaagtacatggacacctgaaggag |
12617485 |
T |
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| Q |
128 |
aaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgttaggtagggtgagatttga |
227 |
Q |
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|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||| ||| ||| || ||||| ||||| |
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| T |
12617484 |
aaaaataaacattttgtccttgttcacacaattggccaacagaaataagattaagtgtcaagttctgtatgcaatagatgtaaggaagagtgaggtttga |
12617385 |
T |
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| Q |
228 |
ggtggatacatgaccggtataagtgat |
254 |
Q |
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|||||||||||||| |||| |||||| |
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| T |
12617384 |
ggtggatacatgactagtatgagtgat |
12617358 |
T |
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