View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12591_low_18 (Length: 234)
Name: NF12591_low_18
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 36196802 - 36196590
Alignment:
| Q |
11 |
gtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatag |
110 |
Q |
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| T |
36196802 |
gtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatag |
36196703 |
T |
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| Q |
111 |
atgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttcccctgtttcttgcagtaattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196702 |
atgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttcccctgtttcttgcagtaattt |
36196603 |
T |
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| Q |
211 |
cgtctgtgcttct |
223 |
Q |
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|||||||| |||| |
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| T |
36196602 |
cgtctgtggttct |
36196590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 36188484 - 36188278
Alignment:
| Q |
11 |
gtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188484 |
gtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatag |
36188385 |
T |
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| Q |
111 |
atgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttcccctgtttcttgcagtaattt |
210 |
Q |
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| T |
36188384 |
atgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagattt-ccctttttcttgcagtaattt |
36188286 |
T |
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| Q |
211 |
cgtctgtg |
218 |
Q |
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| T |
36188285 |
cctctgtg |
36188278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 36209925 - 36209714
Alignment:
| Q |
11 |
gtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatag |
110 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |
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| T |
36209925 |
gtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttt-gcagttatag |
36209827 |
T |
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| Q |
111 |
atgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttcccctgtttcttgcagtaattt |
210 |
Q |
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| T |
36209826 |
atgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaattt |
36209727 |
T |
|
| Q |
211 |
cgtctgtgcttct |
223 |
Q |
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| T |
36209726 |
cctctgtggttct |
36209714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 36198958 - 36198878
Alignment:
| Q |
34 |
aagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaa |
115 |
Q |
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||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
36198958 |
aagtctaaacatgcacatcctttggaaaacacaatgttggagagattagagattggtaagtgctttt-taggtatagatgaa |
36198878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 36207824 - 36207688
Alignment:
| Q |
16 |
agagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaa |
115 |
Q |
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|||| |||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||| | | ||| ||||| | | || ||||| |
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| T |
36207824 |
agagttgatgaaaatttgaagtccaaacatgcacatcatatcgaaaacaccatgttggagagattagaggttcacatgtg-atttgttgttgtatatgaa |
36207726 |
T |
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| Q |
116 |
ctaagattttg-tattctgtcaaatgcttgtgtttgta |
152 |
Q |
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||||||||||| | |||||| ||||||||||| ||||| |
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| T |
36207725 |
ctaagattttgtttttctgttaaatgcttgtgcttgta |
36207688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 36214833 - 36214722
Alignment:
| Q |
14 |
gcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatg |
113 |
Q |
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||||||||| ||||||| |||||||||||||||| | |||||||||||| ||||||| |||||||||| |||| |||||| ||||| ||||||||| |
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| T |
36214833 |
gcagagatggtgaaaatttgaagtccaaacatgcactttatttggaaaacacaatgttggggagattagagattgacaagtgc-tttgttggtatagatc |
36214735 |
T |
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| Q |
114 |
aactaagattttg |
126 |
Q |
| |
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|| ||||| |||| |
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| T |
36214734 |
aattaagactttg |
36214722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 36184643 - 36184500
Alignment:
| Q |
13 |
agcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagag----gttgagaagtgcttttgtaggtat |
108 |
Q |
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||||||| ||||||||||| ||||||||||||| | ||| | |||| ||||||||||||||||||||||| ||| | ||||||||| || | | | |
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| T |
36184643 |
agcagagttgatgaaaatctgaagtccaaacatgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgcttt-gttgttgt |
36184545 |
T |
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| Q |
109 |
agatgaactaagattttg-tattctgtcaaatgcttgtgtttgta |
152 |
Q |
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|||||||||||||||||| | |||||| ||||||||||| ||||| |
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| T |
36184544 |
agatgaactaagattttgtttttctgttaaatgcttgtgcttgta |
36184500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 36200944 - 36200857
Alignment:
| Q |
39 |
caaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttgt |
127 |
Q |
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|||||||||||||| | |||||| ||||||||||||| |||||| |||||| | |||| | ||| ||| |||||||||||||||||||| |
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| T |
36200944 |
caaacatgcacatcatatggaaagcaccatgttggagtgattagtggttgacaggtgc-tgtgttggtgtagatgaactaagattttgt |
36200857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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