View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12591_low_24 (Length: 203)

Name: NF12591_low_24
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12591_low_24
NF12591_low_24
[»] chr5 (1 HSPs)
chr5 (15-185)||(8987600-8987770)
[»] chr6 (2 HSPs)
chr6 (18-157)||(5746883-5747022)
chr6 (35-157)||(34093078-34093199)
[»] scaffold0127 (1 HSPs)
scaffold0127 (35-157)||(21257-21379)
[»] scaffold0620 (1 HSPs)
scaffold0620 (35-157)||(8412-8533)
[»] chr7 (3 HSPs)
chr7 (35-157)||(43344553-43344676)
chr7 (76-149)||(1819720-1819793)
chr7 (68-164)||(30663253-30663349)
[»] chr3 (2 HSPs)
chr3 (32-94)||(4637100-4637162)
chr3 (67-151)||(36602004-36602086)
[»] chr4 (1 HSPs)
chr4 (43-157)||(33283662-33283775)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 8987600 - 8987770
Alignment:
Q  15 cagagactacgaaggcaccatatatatgcggaacacctaaaatagacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaaca 114  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8987600 cagagactacgaaggcaccatatatatgcggaacacccaaaataaacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaaca 8987699  T
Q  115 cccatgatccccaccaccaccaaaaccaatttcaccgcttaaagaaactctatcccaacaaccacttgaaa 185  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8987700 cccatgaaccccaccaccaccaaaaccaatttcaccgcctaaagaaactctatcccaacaaccacttgaaa 8987770  T

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Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 5747022 - 5746883
Alignment:
Q  18 agactacgaaggcaccatatatatgcggaacacctaaaatagacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacaccc 117  Q
    ||||||| |||||  | |||||| ||||||||||||||||  ||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  5747022 agactacaaaggcgtcgtatataggcggaacacctaaaatgaacatcaataaagacacgaattacacacatcacctacctaagacctaccttcaacaccc 5746923  T
Q  118 atgatccccaccaccaccaaaaccaatttcaccgcttaaa 157  Q
    |||| |||||| ||||||||||||||||||||||| ||||    
T  5746922 atgaaccccacaaccaccaaaaccaatttcaccgcctaaa 5746883  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 34093199 - 34093078
Alignment:
Q  35 tatatatgcggaacacctaaaatagacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgatccccaccaccac 134  Q
    |||||| || ||| ||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||| || ||||     
T  34093199 tatataagctgaatacccaaaataaacaccaataaagacacaaaatacacacatcacccacctaagacctgccttcaacacccatgaaccctacaacca- 34093101  T
Q  135 caaaaccaatttcaccgcttaaa 157  Q
    ||||| |||||||||||| ||||    
T  34093100 caaaatcaatttcaccgcctaaa 34093078  T

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Target: scaffold0127 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 21257 - 21379
Alignment:
Q  35 tatatatgcggaacacctaaaatagacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgatccccaccaccac 134  Q
    |||||| |||||||||| |||||  ||| ||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||| |||||| |||||    
T  21257 tatataggcggaacacccaaaatgaacatcaataaagacacgaattacacacgtcacctacctaagacctaccttcaacacccatgaaccccacaaccac 21356  T
Q  135 caaaaccaatttcaccgcttaaa 157  Q
    |||||||||||||||||| ||||    
T  21357 caaaaccaatttcaccgcctaaa 21379  T

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Target: scaffold0620 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 8533 - 8412
Alignment:
Q  35 tatatatgcggaacacctaaaatagacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgatccccaccaccac 134  Q
    |||||| || ||| ||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||| || ||||     
T  8533 tatataagctgaatacccaaaataaacaccaataaagacacaaaatacacacatcacccacctaagacctgccttcaacacccatgaaccctacaacca- 8435  T
Q  135 caaaaccaatttcaccgcttaaa 157  Q
    ||||| |||||||||||| ||||    
T  8434 caaaatcaatttcaccgcctaaa 8412  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 43344553 - 43344676
Alignment:
Q  35 tatatatgcggaacacctaaaatagacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacaccc-atgatccccaccacca 133  Q
    |||||| |||||| ||  |||||| |||||||||||||||| ||||||||||  |||| ||||||||||| |||||||||||| |||| |||||| ||||    
T  43344553 tatataggcggaaaactcaaaataaacaccaataaagacacaaaatacacacgtcacctacctaagacctgccttcaacacccaatgaaccccacaacca 43344652  T
Q  134 ccaaaaccaatttcaccgcttaaa 157  Q
    | || ||||||  |||||| ||||    
T  43344653 caaacaccaataccaccgcctaaa 43344676  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 1819720 - 1819793
Alignment:
Q  76 gaaatacacacagcacccacctaagacctaccttcaacacccatgatccccaccaccaccaaaaccaatttcac 149  Q
    |||||||||||| |||| || ||||||||||||||||||||||||| |||||  ||||| ||||||||||||||    
T  1819720 gaaatacacacatcacctacttaagacctaccttcaacacccatgaaccccataaccacaaaaaccaatttcac 1819793  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 30663349 - 30663253
Alignment:
Q  68 aaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgatccccaccaccaccaaaaccaatttcaccgcttaaagaaactc 164  Q
    ||||||||||||  ||| || ||||  ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||| ||| ||| ||||||    
T  30663349 aaagacacgaaaagcactcatcacctccctaagacctaccatcaacacccataaagcccacaaccaccaaaaccaatatcacagctaaaacaaactc 30663253  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 4637100 - 4637162
Alignment:
Q  32 ccatatatatgcggaacacctaaaatagacaccaataaagacacgaaatacacacagcaccca 94  Q
    ||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||| ||||||    
T  4637100 ccatatataagcggaacacctaaaataaacaccaaaaacgacacgaattacacacatcaccca 4637162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 36602004 - 36602086
Alignment:
Q  67 taaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgatccccaccaccaccaaaaccaatttcaccg 151  Q
    |||||| ||||||||||| || ||||  |||||||||  || ||||||||||| | |||||| |||||||| |||||||||||||    
T  36602004 taaagatacgaaatacacccatcacctccctaagacc--ccatcaacacccataaaccccacaaccaccaagaccaatttcaccg 36602086  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 33283662 - 33283775
Alignment:
Q  43 cggaacacctaaaatagacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgatccccaccaccaccaaaacca 142  Q
    ||||||| | |||||| ||||| ||||| ||||||| |||  ||| |||| | | ||||||||  |||||||||||||| |||||| |||||||||| ||    
T  33283662 cggaacatccaaaataaacaccgataaaaacacgaa-tacctacatcacctatccaagacctaatttcaacacccatgaaccccactaccaccaaaatca 33283760  T
Q  143 atttcaccgcttaaa 157  Q
    ||||| |||| ||||    
T  33283761 atttcgccgcctaaa 33283775  T

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