View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12591_low_5 (Length: 458)
Name: NF12591_low_5
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 5 - 445
Target Start/End: Original strand, 43416718 - 43417160
Alignment:
| Q |
5 |
gagaagcataggaccagaactccaactaattttgtaagtgtgattccactgccagaccaagtaaaaagaaaagggtcaacaaatcaatatgtagacacac |
104 |
Q |
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| T |
43416718 |
gagaagcaaaggaccagaactccaactaattttgtaagtgtgattccactgccagaccaagtaaaaagaaaagggtcaacaaatcaatatgtagacacac |
43416817 |
T |
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| Q |
105 |
accaatagtaagacccc--ccgttgaaatcaatttaccataatgagttataattcatcctacgaaaaattgtactcttaccattcctttagtttaggcaa |
202 |
Q |
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| T |
43416818 |
accaatagtaagaccccccccgttgaaatcaatttaccataatgagttataattcatcctacgaaaaattgtactcttaccattcctttagtttaggcaa |
43416917 |
T |
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| Q |
203 |
taataataaggttttcaaataaacttcgtgaaccatttatattttgacttgttgctgactaattaatttgttggcatacatgattaacttaaataatatc |
302 |
Q |
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| T |
43416918 |
taataataaggttttcaaataaacttcgtgaaccatttatattttgacttgttgctgactaattaatttgttggcatacatgattaacttaaataatatc |
43417017 |
T |
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| Q |
303 |
ccataatacatgtcacatattggtcaaatataaatgctacactcaggtcctaggctgtaagtgccatgacaattctacatgcagtgcaacagtatgcata |
402 |
Q |
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| T |
43417018 |
ccataatacatgtcacatattggtcaaatataaatgctacactcaggtcctaggctgtaagtgccatgacaattctacatgcagtgcaacagtatgcata |
43417117 |
T |
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| Q |
403 |
gccaacctgaatacagaagcacccatagtacacaatgatgtcc |
445 |
Q |
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| T |
43417118 |
gccaacctgaatacagaagcacccatagtacacaatgctgtcc |
43417160 |
T |
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