View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12591_low_6 (Length: 414)
Name: NF12591_low_6
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 85 - 403
Target Start/End: Complemental strand, 7034670 - 7034357
Alignment:
| Q |
85 |
ctatattttgtgctttgttctgttttacatgtaaggatagttaagcaaaagttagaattagcattggtatctgactttaattttgcac----gtatctcc |
180 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
7034670 |
ctatattttgtgctttgttctgatttacatgtatggatagttgtgcaaaagttagaattagcattggtatttgactataattttgcactcttgtatctcc |
7034571 |
T |
|
| Q |
181 |
aattttctaaaagggtgtctggaataagcaacacactaggacttggcatcaaatttagcacatctaaacttatcctaaatattctttcgaaagacatttc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
7034570 |
aattttctaaaagggtgtctggaataagcaacatactaggacttggcatcaaatttagcacatctaagcttatcctaaatatt---------gacatttc |
7034480 |
T |
|
| Q |
281 |
ttgcaatcaaattacatgattcttttgctgttatatttgtactagtttttagttatctggaattacttcgtgatgattattcttgctgtttctaattctg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7034479 |
ttgcaatcaaattacatgattcttttgctgttatatttgtactagtttttagttatctggaattacttcgtgatgtttattcttgctgtttctaattctg |
7034380 |
T |
|
| Q |
381 |
tttcatcattttgttgttgatgt |
403 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
7034379 |
tttcatcatttggttgttgatgt |
7034357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7883031 - 7882981
Alignment:
| Q |
1 |
atgaattagaaacaagccctttgcatctttctttcttaattttcgatttgc |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7883031 |
atgaattagaaacaagccctttgcatctttctttcttaatttttgatttgc |
7882981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 29376473 - 29376360
Alignment:
| Q |
180 |
caattttctaaaagggtgtctggaataagcaacacactaggacttggcatcaaatttagcacatctaaacttatcctaaatattctttcgaaagacattt |
279 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||||| | |||||||||||||| ||||||||| |
|
|
| T |
29376473 |
caatttttcaaaagggtgtctgaaataagcaacacactaggacttggtgttaaattcagcacatcaaaacttgttctaaatattctttcaaaagacattc |
29376374 |
T |
|
| Q |
280 |
cttgcaatcaaatt |
293 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29376373 |
tttgcaatcaaatt |
29376360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44756186 - 44756136
Alignment:
| Q |
1 |
atgaattagaaacaagccctttgcatctttctttcttaattttcgatttgc |
51 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
44756186 |
atgaattaggaacaagccttttgcatctttctttctcaattctcgatttgc |
44756136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 16489443 - 16489500
Alignment:
| Q |
173 |
gtatctccaattttctaaaagggtgtctggaataagcaacacactaggacttggcatc |
230 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
16489443 |
gtatctccaatttttcaaaagggtgttaggaataagtaacacactaggacttgacatc |
16489500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 16490530 - 16490613
Alignment:
| Q |
317 |
ttgtactagtttttagttatctggaattacttcgtgatgattattcttgctgtttctaattctgtttcatcattttgttgttgat |
401 |
Q |
| |
|
||||||||||| |||| | | ||||||||||| || || ||||| |||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
16490530 |
ttgtactagttattaggtctttggaattacttaatgttgtttatttttgctgcttctaattttgtttcatca-tttgttgttgat |
16490613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University