View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12591_low_7 (Length: 413)
Name: NF12591_low_7
Description: NF12591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12591_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 55453281 - 55453665
Alignment:
| Q |
21 |
ccgtcgctctagttattgtcttcgtatcaatgtttggcaaagagcacaagaagctgatgaagtcttcataatctgttttaggacaaatgaatgttaatca |
120 |
Q |
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| T |
55453281 |
ccgtcgctctagttattgtcttcgtatcaatgtttggcaaagagcacaggaagctgatgaagtcttcataatctgttttaggacaaatgaatgttaatca |
55453380 |
T |
|
| Q |
121 |
ccctttgaatttgagcaaaagaaccaagctgatcaagcagtgaattttctattactagtagcaacatatatacctgaagatagaaccaagcctggattat |
220 |
Q |
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| T |
55453381 |
ccctttgaatttgagcaaaagaaccaagctgatcaagcagtgaattttctattactagtagcaacatatatacctgaagatagaaccaagcctggattat |
55453480 |
T |
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| Q |
221 |
tgacacggctagggtccacaatacccgcaccatgttcaaaaggagtggagggatgcaaggtgttggcctcatagccttcggccatcagaggatctccaag |
320 |
Q |
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| T |
55453481 |
tgacacggctagggtccacaatgcccgcaccatgttcaaaaggagtggagggatgcaaggtgttggcctcgtagccttcggccatcagaggatctccaag |
55453580 |
T |
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| Q |
321 |
cttgtcatactttctgctggttgtggtgatcgcagatgctatcatagatggagtccatgacggattatgttgcttgatctgtgct |
405 |
Q |
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| T |
55453581 |
cttgtcatactttctgctggttgtggtgatcgcagatgctatcatagatggagtccatgatggattatgttgcttgatcagtgct |
55453665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 55705039 - 55704941
Alignment:
| Q |
23 |
gtcgctctagttattgtcttcgtatcaatgtttggcaaagagcacaagaagctgatgaagtcttcataatctgttttaggacaaatgaatgttaatcac |
121 |
Q |
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|||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |
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| T |
55705039 |
gtcgctgtagttattgtctttgtatcgatgtttggcaaagagcacaagaagctgatgaagtcttcgtaatctgttttagggtagatgaatgttaatcac |
55704941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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